View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_23 (Length: 240)
Name: NF11490_low_23
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_23 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 8900123 - 8900329
Alignment:
| Q |
18 |
gaatcttgatagataatcacaattggttaagagcaatcacataagtggaagagataccatatcttcatccaaaaccttaagatatgaaatatatggttct |
117 |
Q |
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| T |
8900123 |
gaattttgatagataatcacaattggttaagagcaaccacataagtggaagagacaccatatcttcatctaaaaccttaagatatgaaatatatggttct |
8900222 |
T |
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| Q |
118 |
catcacttatatgttgttcaacatccacttttccattcaatgtgagactctaaatcatgcttgacatacaaacaaacactcaaagtgcgagttcatccat |
217 |
Q |
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| T |
8900223 |
catcacttatatattgttcaacatccacttttccatccaatgtgagactctaaatcatgcttgatatacaaacaagcactcaaagtgcgagttcatccat |
8900322 |
T |
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| Q |
218 |
tcatctg |
224 |
Q |
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||||||| |
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| T |
8900323 |
tcatctg |
8900329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 16367649 - 16367687
Alignment:
| Q |
120 |
tcacttatatgttgttcaacatccacttttccattcaat |
158 |
Q |
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| T |
16367649 |
tcacttatatgttattcaacatccatttttccattcaat |
16367687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 5788874 - 5788915
Alignment:
| Q |
120 |
tcacttatatgttgttcaacatccacttttccattcaatgtg |
161 |
Q |
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| T |
5788874 |
tcacttatatgttgttcaacatctactattgcattcaatgtg |
5788915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 33247 - 33288
Alignment:
| Q |
120 |
tcacttatatgttgttcaacatccacttttccattcaatgtg |
161 |
Q |
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| T |
33247 |
tcacttatatgttgttcaacatctactattgcattcaatgtg |
33288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 27594570 - 27594634
Alignment:
| Q |
119 |
atcacttatatgttgttcaacatccacttttccattcaatgtgagactctaaatcatgcttgaca |
183 |
Q |
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| T |
27594570 |
atcacttatatgttgttcaacatctattattgcattcaatgtggaactttaaatcacacttgaca |
27594634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 21685300 - 21685256
Alignment:
| Q |
124 |
ttatatgttgttcaacatccacttttccattcaatgtgagactct |
168 |
Q |
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| T |
21685300 |
ttatatgttgttcaacatcaactttttcatctaatgtgagactct |
21685256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 41108052 - 41108100
Alignment:
| Q |
120 |
tcacttatatgttgttcaacatccacttttccattcaatgtgagactct |
168 |
Q |
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| T |
41108052 |
tcacttatatggtggtcaacattcacttttctattaaatgtgagactct |
41108100 |
T |
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