View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_3 (Length: 574)
Name: NF11490_low_3
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 49209035 - 49209332
Alignment:
| Q |
18 |
gtttgtgtgtgtaaaaactaaagaaaaaggtttagagtgagttagttaatgcaacaatatatatagtatagtacagggatgaatgaaataacacataaaa |
117 |
Q |
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| T |
49209035 |
gtttgtgtgtgtaaaaactaaagaaaaaggtttagagtgagttagttaatgcaacaatatatatagtatagtatagggatgaatgaaataacacataaaa |
49209134 |
T |
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| Q |
118 |
cagttatgaccgttgatttgagagagagtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaatgaatgagttggaatgctttttggcatg |
217 |
Q |
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| T |
49209135 |
cagttatgaccgttgatttgagagagagtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaatgaatgagttggaatgctttttggcatg |
49209234 |
T |
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| Q |
218 |
cctttgtctttgttgtgtactatgagggtggaacactcatcattctgtcattttcaaatcttccacccacgcatcttcactttttctatataattata |
315 |
Q |
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| T |
49209235 |
cctttgtctttgttgtgtactatgagggtggaacactcatcattctgtcattttcaaatcttccacccacgcatcttcactttttctatataattata |
49209332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 384 - 568
Target Start/End: Original strand, 49209401 - 49209585
Alignment:
| Q |
384 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
483 |
Q |
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| T |
49209401 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
49209500 |
T |
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| Q |
484 |
agtatattgatttctcttgagatattttttactaaataaaaggcttatagtgatgcaacttattatctgtttgtcttcatctcac |
568 |
Q |
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| T |
49209501 |
agtatactgatttctcttgagatattttttactaaataaaagacttatagtgatgcaacttattatctgtttgtcttcttctcac |
49209585 |
T |
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