View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_5 (Length: 451)
Name: NF11490_low_5
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 93 - 414
Target Start/End: Original strand, 42519283 - 42519604
Alignment:
| Q |
93 |
gatataatccttgtaaagtagttttactttttctggtggatgtgattcatctgaaattcctttatgaactttattcattagtttctgctaataaagagaa |
192 |
Q |
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| T |
42519283 |
gatataatccttgtaaagtagttttaatttttctggtggatgtgattcatctgaaattcctttatgaactttattcattagtttctgctaataaagagaa |
42519382 |
T |
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| Q |
193 |
tagaatatatctcttttctggtcttaaaccccgattatatggaacgagggtcctggtaatctgaagctcgaccaagagatgagtaaaatctagccataga |
292 |
Q |
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| T |
42519383 |
tagaatatatctcttttctggtcttaaaccccgattgtatggaacgagggtccaggtaatctgaagcttggccaagagatgagtaaaatctagccataga |
42519482 |
T |
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| Q |
293 |
atgttccagacaggattcaaaccggggctctcccgaatgattcaatcttaaatgaagttaattaatcacttgatcgtagaatatacttattgtgatttga |
392 |
Q |
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| T |
42519483 |
atgttccagacaggattcaaaccggggctctcccgaatgattcaatcttaaatgaagttaattaatcacttgatcgtagaatatacttattgtgatttga |
42519582 |
T |
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| Q |
393 |
catggtcaatactcaagaagtt |
414 |
Q |
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| T |
42519583 |
catggtcaatactcaagaagtt |
42519604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42519191 - 42519254
Alignment:
| Q |
1 |
tttctgtttctgcaaatgtaaagggaatccttggaatttctggaaataatggttttaattgtca |
64 |
Q |
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| T |
42519191 |
tttctgtttctgcaaatgtaaagggaatccttgtaatttctggaattaatggttttacttgtca |
42519254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 42519613 - 42519647
Alignment:
| Q |
410 |
aagtttgaaatattgtttttgaattacctttgctt |
444 |
Q |
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| T |
42519613 |
aagtttgaaatattgtttttgaattacctttgctt |
42519647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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