View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11490_low_6 (Length: 441)

Name: NF11490_low_6
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11490_low_6
NF11490_low_6
[»] chr1 (13 HSPs)
chr1 (1-343)||(42471284-42471632)
chr1 (329-423)||(42471644-42471738)
chr1 (10-99)||(30210177-30210265)
chr1 (16-99)||(4075693-4075777)
chr1 (11-99)||(17746599-17746687)
chr1 (21-99)||(26795461-26795544)
chr1 (10-97)||(37346134-37346221)
chr1 (52-115)||(44108879-44108943)
chr1 (10-85)||(6768956-6769030)
chr1 (8-99)||(5715031-5715122)
chr1 (10-97)||(17702955-17703042)
chr1 (17-79)||(32712100-32712162)
chr1 (33-90)||(50004254-50004310)
[»] chr3 (7 HSPs)
chr3 (10-144)||(40417596-40417728)
chr3 (10-97)||(40700802-40700889)
chr3 (11-64)||(21748185-21748238)
chr3 (16-89)||(48935746-48935819)
chr3 (44-115)||(20525556-20525628)
chr3 (17-97)||(28457566-28457646)
chr3 (10-117)||(45817976-45818083)
[»] chr5 (17 HSPs)
chr5 (1-144)||(26449046-26449188)
chr5 (8-99)||(32528991-32529082)
chr5 (10-99)||(13416334-13416422)
chr5 (24-89)||(42458788-42458853)
chr5 (10-97)||(33007773-33007860)
chr5 (11-97)||(31078167-31078253)
chr5 (13-95)||(39466626-39466708)
chr5 (1-117)||(3522463-3522572)
chr5 (10-97)||(29861166-29861253)
chr5 (32-99)||(39351566-39351633)
chr5 (21-95)||(25346839-25346913)
chr5 (11-116)||(9198025-9198133)
chr5 (22-85)||(16290378-16290441)
chr5 (5-78)||(7010110-7010182)
chr5 (15-64)||(7883572-7883621)
chr5 (10-79)||(33134403-33134471)
chr5 (21-97)||(21091050-21091126)
[»] chr4 (13 HSPs)
chr4 (10-118)||(50876872-50876981)
chr4 (13-97)||(37910443-37910527)
chr4 (21-99)||(26619957-26620035)
chr4 (15-79)||(45498955-45499019)
chr4 (10-85)||(2183991-2184065)
chr4 (4-99)||(14135141-14135235)
chr4 (10-85)||(45413087-45413161)
chr4 (37-99)||(22205335-22205397)
chr4 (22-97)||(36198604-36198679)
chr4 (23-97)||(44289416-44289490)
chr4 (10-79)||(35075167-35075235)
chr4 (42-117)||(14518561-14518637)
chr4 (37-116)||(19180669-19180749)
[»] chr2 (12 HSPs)
chr2 (1-116)||(29463224-29463340)
chr2 (10-79)||(40627037-40627106)
chr2 (10-116)||(12027330-12027436)
chr2 (4-216)||(3044453-3044667)
chr2 (8-99)||(6279141-6279232)
chr2 (10-85)||(6458281-6458355)
chr2 (17-117)||(19427146-19427247)
chr2 (8-97)||(41595539-41595628)
chr2 (21-97)||(13995526-13995602)
chr2 (53-91)||(1529433-1529471)
chr2 (4-117)||(13527031-13527145)
chr2 (16-65)||(5256826-5256874)
[»] chr6 (9 HSPs)
chr6 (10-96)||(32329639-32329725)
chr6 (10-97)||(9315106-9315193)
chr6 (10-97)||(391061-391148)
chr6 (10-97)||(12255411-12255498)
chr6 (15-64)||(29969609-29969658)
chr6 (130-245)||(128782-128898)
chr6 (10-97)||(23404785-23404872)
chr6 (37-99)||(31799401-31799463)
chr6 (10-66)||(12771332-12771387)
[»] chr7 (7 HSPs)
chr7 (16-117)||(37970448-37970550)
chr7 (11-90)||(44108478-44108556)
chr7 (10-99)||(29127431-29127519)
chr7 (1-114)||(41481795-41481907)
chr7 (10-117)||(28109241-28109349)
chr7 (22-79)||(34866231-34866288)
chr7 (16-117)||(23318319-23318420)
[»] chr8 (11 HSPs)
chr8 (1-116)||(39284570-39284686)
chr8 (1-117)||(32897612-32897729)
chr8 (10-90)||(40953535-40953615)
chr8 (10-85)||(15259188-15259263)
chr8 (10-97)||(16295635-16295722)
chr8 (10-97)||(16303337-16303424)
chr8 (10-97)||(43597131-43597218)
chr8 (10-64)||(11656124-11656178)
chr8 (17-63)||(27696563-27696609)
chr8 (15-97)||(42180609-42180690)
chr8 (21-97)||(3174216-3174292)
[»] scaffold0474 (1 HSPs)
scaffold0474 (1-71)||(11309-11379)
[»] scaffold1822 (1 HSPs)
scaffold1822 (4-78)||(543-616)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 42471284 - 42471632
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  42471284 tagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcatgtgtttggtgcacacatgataagaaatatgatagcattattta 42471383  T
Q  101 tcatatcat-----gtgtttggcgcatagtttt-attattgacatgataaaaataacaacactccataactttaattttacacacgtaattaattatatt 194  Q
    |||||||||     ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  42471384 tcatatcatatcatgtgtttggcgcatagtttttattattgatatgatgaaaataacaacactccataactttaattttacacacgtaattaaatctatt 42471483  T
Q  195 ggtaacaagattgggaagaaaatgatggaattgatattgactgtaattttacgaagnnnnnnnnttataaagaaattcgtaatttagaaagattgggaac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |||| |||||| ||||||||||||||||||||||||    
T  42471484 ggtaacaagattgggaagaaaatgatggaattgatattgactgtaattttatgaagaaaaaaaattatgaagaaaatcgtaatttagaaagattgggaac 42471583  T
Q  295 agaattatgaagaaaattgtaaagaattatggagaaaacaaattgtgca 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42471584 agaattatgaagaaaattgtaaagaattatggagaaaacaaattgtgca 42471632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 329 - 423
Target Start/End: Original strand, 42471644 - 42471738
Alignment:
Q  329 aaaacaaattgtgcaaaaatgattggaggaacattgaaaagtaaatcgattgcagaaaatcaattagacaaaatagccaattttcatatgaagaa 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42471644 aaaacaaattgtgcaaaaatgattggaggaacattgaaaagtaaatcgattgcagaaaatcaattagacaaaatagccaattttcatatgaagaa 42471738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 30210265 - 30210177
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||| |||||||||||||| ||| ||||||  |||||||    
T  30210265 gataaagatatgatatgataatgacatgata-acatttatcctatcacttgtttgatacacacatgataagaaacatgataatattattt 30210177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 4075693 - 4075777
Alignment:
Q  16 gatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa-aaaatatgatagcattattt 99  Q
    |||| ||||||||| ||||| |||||||| ||||| ||||||||||||||| |||||||| ||| ||||||  ||||||||||||    
T  4075693 gataggatatgatagtgacaagatagacacttatcctatcatgtgtttggttcacacatggtaagaaaatacaatagcattattt 4075777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 17746687 - 17746599
Alignment:
Q  11 ataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||| |||||||||||||  | || |||||||||||||||||| |||||| |  ||||||||||| |||||| |||| |||||||    
T  17746687 ataaagatgtgatatgataatggtaggagagacatttatcatatcatatgtttgttgaacacatgataacaaatattatagtattattt 17746599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 26795544 - 26795461
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatg-----ataaaaaatatgatagcattattt 99  Q
    ||||||||| |||||||||||||  ||||| ||||||||||||||| ||||||||     |||||||| |||||||||||||||    
T  26795544 gatatgatactgacatgatagacgcttatcctatcatgtgtttggtgcacacatgataagataaaaaaaatgatagcattattt 26795461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 37346134 - 37346221
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||| ||||||||||||| | | |||||||||| ||| |||||| ||||||    
T  37346134 gatagagataggatatgataaggacatgataaacattaatcctatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 37346221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 44108943 - 44108879
Alignment:
Q  52 tatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatcatgtgttt 115  Q
    ||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||||||    
T  44108943 tatcatgtgtttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 6769030 - 6768956
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    |||||||||||||||||||| |||| ||||| || |||||| |||||  |||||||| ||||||||||||| ||||    
T  6769030 gataaagatatgatatgatagtgacttgata-acgtttatcctatcacatgtttggtgcacacatgataaacaata 6768956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 5715031 - 5715122
Alignment:
Q  8 tagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||||||  || |||||| ||  | |||||| |||||||||||||| |||||||| ||| |||||||| |||||| |||  |||||||    
T  5715031 tagataaagatgagacatgatagtggtaagatagatatttatcatatcatatgtttggtgcacgcatgataataaatattataatattattt 5715122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 17703042 - 17702955
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| |||||||||| |||||||||  |||| ||| |||||||| |||| | |||||||||||| ||| | |||| ||||||    
T  17703042 gatagagataagatatgataaagacatgataagcattaatcctatcatgtttttgatgcacacatgataacaaacaggatatcattat 17702955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 32712100 - 32712162
Alignment:
Q  17 atatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    ||||||||||||| | |||||||||| | ||||  ||||||| ||||||| ||||||||||||    
T  32712100 atatgatatgatagtaacatgatagatacttatgctatcatgcgtttggtgcacacatgataa 32712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 50004254 - 50004310
Alignment:
Q  33 acatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgata 90  Q
    |||||||| ||||||||| |||||| |||||||| |||||||||||| ||| ||||||    
T  50004254 acatgata-acatttatcctatcatatgtttggtgcacacatgataacaaacatgata 50004310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 40417728 - 40417596
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatca 108  Q
    ||||| |||| ||||||| | |||||||||| |||||||||||||||| |||||||| ||| |||||||| |||||||||||||||| ||||||||||||    
T  40417728 gataaggataggatatgacagtgacatgata-acatttatcatatcatatgtttggtgcacgcatgataagaaatatgatagcattattttatcatatca 40417630  T
Q  109 tgtgtttggcgcatagttttattattgacatgataa 144  Q
    |||||||| | ||||  ||| |||||||||||||||    
T  40417629 tgtgtttgacacata--tttgttattgacatgataa 40417596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 40700802 - 40700889
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||| ||||||||||||| | |||||||||||| ||| |||||| ||||||    
T  40700802 gatagagataggatatgataaggacatgataaacattaatcctatcatgtgtttgatgcacacatgataacaaacatgatatcattat 40700889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 21748185 - 21748238
Alignment:
Q  11 ataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttg 64  Q
    ||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||    
T  21748185 ataaagataggatatgataaggacatgataaacattaatcatatcatgtgtttg 21748238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 48935746 - 48935819
Alignment:
Q  16 gatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgat 89  Q
    |||| |||| |||| |||||||||||||| ||||| |||||||||||||||  ||||||||||| ||| |||||    
T  48935746 gataggataggatagtgacatgatagacacttatcctatcatgtgtttggtgtacacatgataagaaagatgat 48935819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 20525628 - 20525556
Alignment:
Q  44 atttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatcatgtgttt 115  Q
    ||||||||||||||||||||||| || | ||||||| ||| ||||||  |||| ||||||||||||| |||||    
T  20525628 atttatcatatcatgtgtttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 28457566 - 28457646
Alignment:
Q  17 atatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    ||||||||||| |||||||||||| ||||  ||| |||||| |||||| | | |||||||||| ||||| |||| ||||||    
T  28457566 atatgatatgacaatgacatgataaacatcaatcctatcatatgtttgatgcgcacatgataacaaataagatatcattat 28457646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 45817976 - 45818083
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatca 108  Q
    ||||| ||||| |||  ||||| |||||||||||| |||||||||| |  |||||||| ||||||||||| ||| | |||| ||||| |||||| |||||    
T  45817976 gataaggatattataaaataataacatgatagacacttatcatatcttacgtttggtatacacatgataagaaaga-gataacattattttatcctatca 45818074  T
Q  109 tgtgtttgg 117  Q
    | |||||||    
T  45818075 tatgtttgg 45818083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26449188 - 26449046
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-ttt 99  Q
    |||||||| |||||| ||||||||||||| |||||||||||||| ||||| |||||||  |||||| |||| ||||||| ||| |||||| ||||| |||    
T  26449188 tagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcatgcttttggtgcacatatgataagaaagatgatatcattatttt 26449089  T
Q  100 atcatatcatgtgtttggcgcatagttttattattgacatgataa 144  Q
    ||| |||||||||||||  ||| |  ||| |||||||||||||||    
T  26449088 atcctatcatgtgtttgttgcaca--tttgttattgacatgataa 26449046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 32528991 - 32529082
Alignment:
Q  8 tagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||||||| ||||||||| ||| |||||||||| ||||  ||||||||||||||| || | ||||||| ||||||||||| |||||||    
T  32528991 tagataaagataggatatgatactgatatgatagacacttattctatcatgtgtttggtgcatagatgataacaaatatgatagtattattt 32529082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 13416334 - 13416422
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    ||||| |||||||||||||| |||||||||| ||||| ||| ||| ||||||||||| |||| ||||||| ||| |||||||||||||||    
T  13416334 gataaggatatgatatgatagtgacatgataaacatt-atcctattatgtgtttggtgcacatatgataagaaagatgatagcattattt 13416422  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 42458788 - 42458853
Alignment:
Q  24 atgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgat 89  Q
    |||||| | ||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||    
T  42458788 atgatattaacatgatagacatgtatcatgtcatgtgtttggtgcacacatgataagaaatatgat 42458853  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 33007773 - 33007860
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| ||||||||||||||||||||   ||| ||||||||||||||||| | |||||||||||| ||| | |||| ||||||    
T  33007773 gatagagataagatatgataatgacatgataagtattaatcatatcatgtgtttgatgcacacatgataacaaacaagatatcattat 33007860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 31078253 - 31078167
Alignment:
Q  11 ataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||| ||||||||| ||||||||| ||||| ||  ||||||||||||| | | |||||||||| ||| |||||| ||||||    
T  31078253 ataaagatataatatgataaagacatgataaacattaattctatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 31078167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 39466708 - 39466626
Alignment:
Q  13 aaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatt 95  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||  |||||||  |||| |||||| |||| |||||||||||    
T  39466708 aaagatatgatatgatagtaacaggatatacatttatcatatcacatgtttggggcacatatgatataaaagatgatagcatt 39466626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3522463 - 3522572
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-ttt 99  Q
    |||||||||||||||||||| |||||||| | |||||||| ||||||||| ||        ||||| ||| |||||||||||| |||||| ||||| |||    
T  3522463 tagaaaatagataaagatataatatgatagtaacatgataaacatttatccta--------ttggtgcacgcatgataaaaaagatgataacattatttt 3522554  T
Q  100 atcatatcatgtgtttgg 117  Q
    ||| |||| |||||||||    
T  3522555 atcctatcgtgtgtttgg 3522572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 29861253 - 29861166
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| |||||||||||||||||||| ||||| ||| ||||||||||||| |   |||||||||| ||| | |||| ||||||    
T  29861253 gatagagataagatatgataatgacatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaacacgatatcattat 29861166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 39351633 - 39351566
Alignment:
Q  32 gacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||||  |||| ||||||||||||||||| | | |||||||||| |||||||||| ||||||||    
T  39351633 gacatgatatgcattaatcatatcatgtgtttgatgcgcacatgataacaaatatgatatcattattt 39351566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 25346839 - 25346913
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatt 95  Q
    |||||||||| ||||||||| ||||| ||| ||||||||||||| | | |||||||||| ||||| |||| ||||    
T  25346839 gatatgataaagacatgataaacattaatcctatcatgtgtttgatgcgcacatgataacaaataggatatcatt 25346913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 9198133 - 9198025
Alignment:
Q  11 ataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtt--tggtacacacatgataaaaaatatgatagcatta-tttatcatatc 107  Q
    ||||||||| |||||||||  || | |||||||| ||||||| ||||  |||  |||| |||||||||||||||| ||||||  |||| ||||||||||     
T  9198133 ataaagataggatatgatagggataagatagacacttatcatgtcatacgttcttggtgcacacatgataaaaaagatgataatattattttatcatatt 9198034  T
Q  108 atgtgtttg 116  Q
    |||||||||    
T  9198033 atgtgtttg 9198025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 16290378 - 16290441
Alignment:
Q  22 atatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    |||||||| |||||||||||||| ||||| ||||||||||| | |  ||| |||||||||||||    
T  16290378 atatgatagtgacatgatagacaattatcctatcatgtgttcgatgtacaaatgataaaaaata 16290441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 7010110 - 7010182
Alignment:
Q  5 aaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgata 78  Q
    |||| ||||| ||||  |||||||| |||||||||| ||||||||| |||||  |||||||| |||||||||||    
T  7010110 aaatggataaggatagaatatgatagtgacatgata-acatttatcctatcacctgtttggtgcacacatgata 7010182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7883572 - 7883621
Alignment:
Q  15 agatatgatatgataatgacatgatagacatttatcatatcatgtgtttg 64  Q
    ||||| |||||||||| |||||| || ||||| |||||||||||||||||    
T  7883572 agataggatatgataaggacatgttaaacattaatcatatcatgtgtttg 7883621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 33134471 - 33134403
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||| ||||||||||||| | | ||||||||||    
T  33134471 gatagagataagatatgataaagacatgata-acattaatcctatcatgtgtttgatgcgcacatgataa 33134403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 21091050 - 21091126
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||| ||||||||| || || ||| ||||||||||||| | | |||||||||| ||| | |||| ||||||    
T  21091050 gatatgataaggacatgataaaccttaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattat 21091126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 50876981 - 50876872
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat-ttatcatatca 108  Q
    ||||| ||||||||| ||||||||||||||| |||  |||||||||||| |||||||  |||||||||||||||||||||| || ||| ||||| |||||    
T  50876981 gataaggatatgatacgataatgacatgatatacacctatcatatcatgcgtttggtggacacatgataaaaaatatgataacaatatattatcttatca 50876882  T
Q  109 tgtgtttggc 118  Q
    | ||||||||    
T  50876881 tatgtttggc 50876872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 37910443 - 37910527
Alignment:
Q  13 aaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||| ||| | |||| ||||||    
T  37910443 aaagataggatatgataatgacatgataaacattaatcatatcatgtgtttgatgcacacatgataacaaacaggatatcattat 37910527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 26619957 - 26620035
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    ||||||||||| |||||||||||||||||| | |||||  |||| | ||  ||||||||||||||||||||||||||||    
T  26619957 gatatgataataacatgatagacatttatcctttcatgcatttgatgcatgcatgataaaaaatatgatagcattattt 26620035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 45498955 - 45499019
Alignment:
Q  15 agatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    ||||| |||||||||| ||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  45498955 agataggatatgataaggacatgataaacattaatcatatcatgtgtttgatgcacacatgataa 45499019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 2184065 - 2183991
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    ||||| ||||||||||||||||||| | ||| ||||||||| |||||  |||||||| ||||||||||||| ||||    
T  2184065 gataaggatatgatatgataatgaccttata-acatttatcttatcacatgtttggtgcacacatgataaataata 2183991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 14135141 - 14135235
Alignment:
Q  4 aaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    ||||| |||| ||| |||||||||||  ||||||||| |||||||||||||||||| ||||   | |||||||||| ||||| |||| ||||||||    
T  14135141 aaaatggatagagacatgatatgatatagacatgata-acatttatcatatcatgtatttgacgcgcacatgataataaataagataacattattt 14135235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 45413087 - 45413161
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    ||||||||||| |||||||| |||| ||||| ||||||||| |||||| |||||| | ||||||||||||| ||||    
T  45413087 gataaagatataatatgatagtgacctgata-acatttatcttatcatatgtttgatgcacacatgataaataata 45413161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 22205397 - 22205335
Alignment:
Q  37 gatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||| ||||||||| ||||||| ||||||| || || |||||||||| |||||||||||||||    
T  22205397 gataaacatttatcctatcatgcgtttggtgcatacttgataaaaaagatgatagcattattt 22205335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 36198604 - 36198679
Alignment:
Q  22 atatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||  |||||||| ||||| ||| ||||||||||||| |   |||||||||| |||||||||| ||||||    
T  36198604 atatgataagtacatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaatatgatatcattat 36198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 44289416 - 44289490
Alignment:
Q  23 tatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||| ||||||||| ||||| ||| | ||||||||||| | | |||||||||| ||| |||||| ||||||    
T  44289416 tatgataaggacatgataaacattaatcttctcatgtgtttgatgcgcacatgataacaaacatgatatcattat 44289490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 35075235 - 35075167
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    ||||| |||| ||||||||| |||||| ||| ||||||||| ||| |  |||||||||||||||||||||    
T  35075235 gataatgataggatatgatagtgacataata-acatttatcctattacatgtttggtacacacatgataa 35075167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 14518637 - 14518561
Alignment:
Q  42 acatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatcatgtgtttgg 117  Q
    |||| |||||||||||||||||| | | |||| ||||| ||| ||||||  |||| ||||||||||||| |||||||    
T  14518637 acatgtatcatatcatgtgtttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttgg 14518561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 19180669 - 19180749
Alignment:
Q  37 gatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatcatgtgtttg 116  Q
    |||||||| |||||||| |||  ||||||| ||| |||||||| || | ||||||||||  |||||||| |||||||||||    
T  19180669 gatagacacttatcatagcatacgtttggttcacgcatgataagaagtttgatagcattgctttatcatttcatgtgtttg 19180749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29463340 - 29463224
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-ttt 99  Q
    |||||||||||| |||||| ||||||||| |||||||||| |||||||||  | ||| ||||||||  ||| ||||||| ||| |||||||||||| |||    
T  29463340 tagaaaatagatgaagataagatatgatagtgacatgataaacatttatccgaacatatgtttggtgtacatatgataagaaagatgatagcattatttt 29463241  T
Q  100 atcatatcatgtgtttg 116  Q
    |||||||||| ||||||    
T  29463240 atcatatcatatgtttg 29463224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 40627106 - 40627037
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    ||||| ||||| |||||||| | ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  40627106 gataaggatataatatgatagtaacaagatagacacttatcatttcatgtgtttggtacacacatgataa 40627037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 12027436 - 12027330
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatca 108  Q
    ||||| |||||||||||||| ||| || ||| ||||||||||| |||||||||| |  |||||||||||||||| | |||| ||||| |||||| |||||    
T  12027436 gataaggatatgatatgatagtgatataata-acatttatcatgtcatgtgttttgggcacacatgataaaaaagaggatatcattattttatcctatca 12027338  T
Q  109 tgtgtttg 116  Q
     |||||||    
T  12027337 cgtgtttg 12027330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 3044453 - 3044667
Alignment:
Q  4 aaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatc 102  Q
    |||| ||||||||||| | ||||||| | | |||||| | | ||||| |||||| ||||||||||| ||||||||| ||| | |||||||||| |||||     
T  3044453 aaaaaagataaagataggctatgatagtaatatgataaagacttatcctatcatatgtttggtacatacatgataagaaaaaagatagcattattttatt 3044552  T
Q  103 atatca----tgtgtttggcgcatagttttattattgaca-tgataaaaataacaacactccataactttaattttacacacgtaattaattatattggt 197  Q
     |||||    | ||||||| ||| | |    ||||||||| ||||||||  |||||| || |||||||| |||||||||||| ||||||| |  ||||      
T  3044553 ctatcatttgtttgtttggtgcacact----ttattgacattgataaaataaacaacgctgcataacttaaattttacacacataattaaatcaattgtg 3044648  T
Q  198 aacaagattgggaagaaaa 216  Q
    ||||||||||| |||||||    
T  3044649 aacaagattggaaagaaaa 3044667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 6279232 - 6279141
Alignment:
Q  8 tagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||  ||||||||||| ||| | |||||| || ||||||||||||||||||||||   ||||||||||||| || ||| |||| ||||    
T  6279232 tagataagtatatgatatgacaataatatgataaacttttatcatatcatgtgtttggtgaccacatgataaaaattaggattgcatcattt 6279141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 6458355 - 6458281
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    ||||| ||||||||||||||||||| | ||| ||||||||| |||||  |||||||| ||||||||||||| ||||    
T  6458355 gataaggatatgatatgataatgactttata-acatttatcctatcacatgtttggtgcacacatgataaataata 6458281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 19427247 - 19427146
Alignment:
Q  17 atatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat-ttatcatatcatgtgttt 115  Q
    ||||||||| ||| ||| | ||||||||| |||| | ||||  ||||||| || | ||||||| ||||||||||||||||| |||||||||  |||||||    
T  19427247 atatgatatcatagtgataagatagacatctatcgtgtcatacgtttggtgcatatatgataataaatatgatagcattatgttatcatattttgtgttt 19427148  T
Q  116 gg 117  Q
    ||    
T  19427147 gg 19427146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 41595628 - 41595539
Alignment:
Q  8 tagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||| ||| ||||||||| |   ||||| |||| ||| |||||| ||||||    
T  41595628 tagatatagataagatatgataatgacatgataaacattaatcctattatgtgtttgatgtgcacataataacaaacatgatatcattat 41595539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 13995526 - 13995602
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    ||||||| || ||||||||| ||||| ||| ||||||||||||| | | |||||||||| ||| |||||| ||||||    
T  13995526 gatatgacaaggacatgataaacattaatcctatcatgtgtttgatgcgcacatgataagaaacatgatatcattat 13995602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 1529433 - 1529471
Alignment:
Q  53 atcatgtgtttggtacacacatgataaaaaatatgatag 91  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  1529433 atcatgtgtttggtgcacacatgataagaaatatgatag 1529471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 13527031 - 13527145
Alignment:
Q  4 aaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatc 102  Q
    ||||| ||||||||||  ||||||||||| || |||| | |||||||   |||||  |||| | ||||||| |||| |||||||||| ||||| ||||||    
T  13527031 aaaattgataaagatagaatatgataatggcaggataaatatttatcccctcatgcatttgatgcacacataataagaaatatgataacattattttatc 13527130  T
Q  103 atatcatgtgtttgg 117  Q
     |||||| |||||||    
T  13527131 ctatcatatgtttgg 13527145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 5256874 - 5256826
Alignment:
Q  16 gatatgatatgataatgacatgatagacatttatcatatcatgtgtttgg 65  Q
    |||||||||||||| |||||||||||||| ||||| |||| |||||||||    
T  5256874 gatatgatatgatagtgacatgatagaca-ttatcctatcgtgtgtttgg 5256826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 32329725 - 32329639
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta 96  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||||||||||||||||| ||| |||||||||| |||||||||| |||||    
T  32329725 gatagagataagatatgataaggacatgataaacattaatcatatcatgtgtttgatacgcacatgataacaaatatgatatcatta 32329639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 9315193 - 9315106
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| | | |||||||||| ||| | |||| ||||||    
T  9315193 gatagagatatgatatgataaggacatgataaacattaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattat 9315106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 391061 - 391148
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||| ||||||||||||| |   |||||||||| ||||| |||| ||||||    
T  391061 gatagagataagatatgataaagacatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaataggatatcattat 391148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 12255498 - 12255411
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| ||||| ||||| |||| ||||||||| ||||| ||| ||||||||||||| | | |||||||||| ||| |||||| ||||||    
T  12255498 gatagagataggatattataaagacatgataaacattaatcttatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 12255411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 29969609 - 29969658
Alignment:
Q  15 agatatgatatgataatgacatgatagacatttatcatatcatgtgtttg 64  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  29969609 agatatgatatgataaggacatgataaacattaatcctatcatgtgtttg 29969658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 128782 - 128898
Alignment:
Q  130 ttattgacatgataaaaataacaacactccataactttaattttacacacgtaattaattatattggtaacaagattgggaagaaaa-tgatggaattga 228  Q
    |||||||||||||||||  |||||   |  |||||||||||||||||| | ||||||| || ||||  ||||||||||| |||||||  | |||||||||    
T  128782 ttattgacatgataaaataaacaaagatgtataactttaattttacacccataattaaataaattgcgaacaagattggaaagaaaacagttggaattga 128881  T
Q  229 tattgactgtaatttta 245  Q
    ||| || ||| ||||||    
T  128882 tatcgattgttatttta 128898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 23404872 - 23404785
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||| |||||||||| ||||||||| ||||| ||  ||||||||||||| |   |||||||||| ||| | |||| ||||||    
T  23404872 gataaagataagatatgataaggacatgataaacattaatattatcatgtgtttgatgtgcacatgataacaaacacgatatcattat 23404785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 31799401 - 31799463
Alignment:
Q  37 gatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    |||||||| |||||||||||| |||||  | |||| ||||||| ||||||||||| |||||||    
T  31799401 gatagacacttatcatatcatatgttttatgcacatatgataagaaatatgatagtattattt 31799463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 12771332 - 12771387
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggt 66  Q
    ||||| |||| ||||||||||| |||||||||| | ||||| |||||||||||||||    
T  12771332 gataaggataggatatgataataacatgataga-acttatcctatcatgtgtttggt 12771387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 37970550 - 37970448
Alignment:
Q  16 gatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatcatgtgtt 114  Q
    |||| ||||||||| ||||| |||| ||||||||| |||||||  |||||| ||||| |||||||||| |||||||||||| |||||| ||||||| |||    
T  37970550 gataagatatgatagtgacaggataaacatttatcctatcatgcatttggtgcacacttgataaaaaagatgatagcattattttatcctatcatgcgtt 37970451  T
Q  115 tgg 117  Q
    |||    
T  37970450 tgg 37970448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 44108556 - 44108478
Alignment:
Q  11 ataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgata 90  Q
    ||||||||| ||||||||| ||||| |||| ||||||||| ||||||||| ||||||| |||||||||| ||| ||||||    
T  44108556 ataaagataggatatgatagtgacaagatatacatttatcctatcatgtg-ttggtactcacatgataagaaagatgata 44108478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 29127519 - 29127431
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt 99  Q
    ||||| |||||||||||||| ||| | |||| ||||||||| | ||||| ||||||| ||||| |||| ||||| |||||||||||||||    
T  29127519 gataaggatatgatatgatagtgataggataaacatttatcttgtcatgcgtttggtgcacacttgat-aaaaagatgatagcattattt 29127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 41481795 - 41481907
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatt--att 98  Q
    ||||||||  ||||||||| |||| | || |||||||||||||| ||||| | ||||| |||||||  ||||||||||||||| |||||| ||||   ||    
T  41481795 tagaaaatgtataaagataggatagg-tagtgacatgatagacacttatcctgtcatgcgtttggt--acacatgataaaaaagatgataacatttattt 41481891  T
Q  99 tatcatatcatgtgtt 114  Q
    ||||||||||||||||    
T  41481892 tatcatatcatgtgtt 41481907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 28109349 - 28109241
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-tttatcatatca 108  Q
    |||||||||| ||||||||| | || | ||| ||||||||||||| |||| ||||||  | ||||||||| |||| |||||| |||| |||||||||||     
T  28109349 gataaagataagatatgatagtaacgtaataaacatttatcatattatgtatttggtgtatacatgataagaaatgtgatagaattattttatcatatcg 28109250  T
Q  109 tgtgtttgg 117  Q
    | |||||||    
T  28109249 tatgtttgg 28109241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 34866231 - 34866288
Alignment:
Q  22 atatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataa 79  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||| | | ||||||||||    
T  34866231 atatgataatgacatgataaacattaatcttatcatgtgtttgatgcgcacatgataa 34866288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 23318319 - 23318420
Alignment:
Q  16 gatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattattt-atcatatcatgtgtt 114  Q
    |||| ||||||||| | ||  |||| ||||||||||||||   ||||||||  ||||||||| |||||||||||||||| |||| ||| |||||| ||||    
T  23318319 gataggatatgatagtaactggataaacatttatcatatcccatgtttggttaacacatgat-aaaaatatgatagcatgatttaatcgtatcatatgtt 23318417  T
Q  115 tgg 117  Q
    |||    
T  23318418 tgg 23318420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39284686 - 39284570
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcatta-ttt 99  Q
    |||||| | |||||||||| |||| || | | ||||||||||||| |||||||||||||||||||  || ||||||||||||  | |||| ||||| |||    
T  39284686 tagaaattggataaagataggataagaaagtaacatgatagacatctatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattatttt 39284587  T
Q  100 atcatatcatgtgtttg 116  Q
    |||||||||| ||||||    
T  39284586 atcatatcatatgtttg 39284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32897729 - 32897612
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagca-ttattt 99  Q
    |||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||||||  ||||||| || | ||||||| ||| | |||| || || |||    
T  32897729 tagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacgtttggtgcagatatgataagaaagaggataacattttttt 32897630  T
Q  100 atcatatcatgtgtttgg 117  Q
    ||| |||||| |||||||    
T  32897629 atcctatcatatgtttgg 32897612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 40953615 - 40953535
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgata 90  Q
    |||| ||||| |||||||||| ||||||||| ||||| ||||||||||||||||| | | |||||||||| ||| ||||||    
T  40953615 gatagagataggatatgataacgacatgataaacattaatcatatcatgtgtttgatgcgcacatgataacaaacatgata 40953535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 15259263 - 15259188
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaata 85  Q
    |||||| | |||||||||||  || |||||| ||||||||||||||||||||||  ||||  ||||||||||||||    
T  15259263 gataaaaacatgatatgatatagatatgataaacatttatcatatcatgtgtttaatacatgcatgataaaaaata 15259188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 16295722 - 16295635
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |   |||||||||| ||| | |||| ||||||    
T  16295722 gatagagatatgatatgataaggacatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaacaggatatcattat 16295635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 16303424 - 16303337
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |   |||||||||| ||| | |||| ||||||    
T  16303424 gatagagatatgatatgataaggacatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaacaggatatcattat 16303337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 43597218 - 43597131
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||| |||||||||||||||| ||||||||| ||||| ||| |||||| |||||| |   |||||||||| |||||| ||| ||||||    
T  43597218 gatagagatatgatatgataaggacatgataaacattaatcctatcatatgtttgatgggcacatgataacaaatataatatcattat 43597131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 11656124 - 11656178
Alignment:
Q  10 gataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttg 64  Q
    |||| ||||| |||||||||| ||||||||| ||||| |||||||||||||||||    
T  11656124 gatagagataggatatgataaggacatgataaacattaatcatatcatgtgtttg 11656178  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 27696609 - 27696563
Alignment:
Q  17 atatgatatgataatgacatgatagacatttatcatatcatgtgttt 63  Q
    |||||||||||||| ||||||||| ||||| ||| ||||||||||||    
T  27696609 atatgatatgataaggacatgataaacattaatcctatcatgtgttt 27696563  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 42180690 - 42180609
Alignment:
Q  15 agatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||||||||| ||||||||| ||||| ||| ||||||  ||||| | | |||||||||| ||| |||||| ||||||    
T  42180690 agatatgatatgataaggacatgata-acattaatcctatcatacgtttgatgcgcacatgataacaaacatgatatcattat 42180609  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3174292 - 3174216
Alignment:
Q  21 gatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgataaaaaatatgatagcattat 97  Q
    |||||||||| ||||||||| ||||| ||| ||||||||||||| | |  ||||||||| ||| || ||| ||||||    
T  3174292 gatatgataaggacatgataaacattaatcctatcatgtgtttgatgcgtacatgataacaaacataatatcattat 3174216  T

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Target: scaffold0474 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11379 - 11309
Alignment:
Q  1 tagaaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacaca 71  Q
    |||||||| |||||||||||  ||||||| |||||||||| ||||||||| | ||||||||||||| ||||    
T  11379 tagaaaattgataaagatatagtatgatagtgacatgataaacatttatcttgtcatgtgtttggtgcaca 11309  T

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Target: scaffold1822 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 543 - 616
Alignment:
Q  4 aaaatagataaagatatgatatgataatgacatgatagacatttatcatatcatgtgtttggtacacacatgata 78  Q
    ||||| ||||| |||| |||||| || |||||||||| |||| |||| ||||||||||||||| |||||||||||    
T  543 aaaatggataaggataggatatggtagtgacatgata-acatctatcctatcatgtgtttggtgcacacatgata 616  T

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