View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11490_low_7 (Length: 441)
Name: NF11490_low_7
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 5016322 - 5016609
Alignment:
| Q |
21 |
cagagacaaaatctaaaacaacactttgagtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5016322 |
cagagacaaaatctaaaacaacactt-gagtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaac |
5016420 |
T |
|
| Q |
121 |
ccttaatgcttgaattcacagtttgccaccaattggctatacttcactctaggttataattgtaacactcgtaccttatatgaatatccctcactatgga |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5016421 |
cctta-tgcttgaattcacagtttgccaccaattggctatacttcactctaggttatagttgtaacactcgtaccttatacgaatatccctcactatgga |
5016519 |
T |
|
| Q |
221 |
aatcaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaatcttctatttctt |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5016520 |
aaccaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaattttctatttctt |
5016609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 5016606 - 5016677
Alignment:
| Q |
351 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgct |
423 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgct |
5016677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University