View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_high_10 (Length: 353)
Name: NF11491_high_10
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 34624692 - 34624357
Alignment:
| Q |
1 |
gattgtttgtaatagtacgtgatttcttaataatgttggataaggtgtgcaaagagattcaaaaagcaccaaagaaaccaataacaaagaatgtgaaaca |
100 |
Q |
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| T |
34624692 |
gattgtttgtaatagtacgtgatttcttaataatgttggataaggtgtgcaaagagattcaaaaagcaccaaagaaaccaataacaaagaatgtgaaaca |
34624593 |
T |
|
| Q |
101 |
agataaagatactgctagttctagaggttcatcaaagccagaaactcgtcgtccaccgccgtcagattttcgcgagcgaatgtttccagcagtggtagat |
200 |
Q |
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| T |
34624592 |
agataaagatactgctagttctagaggttcatcaaagccagaaactcgtcgtccaccgccgtcagattttcgcgagcgaatgtttccagcagtggtagat |
34624493 |
T |
|
| Q |
201 |
aggagagtggatgattttagttcagatgatgacagtccataggttcaattcaagttggaagttgtactgtaa-ttttattttttcatcaaatagtcatgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
34624492 |
aggagagtggatgattttagttcagatgatgacagtccataggttcaattcaagttggaagttgtactgtaattttttttttttcatcaaatagtcatgt |
34624393 |
T |
|
| Q |
300 |
catttaattactatagcattgttacatagacatgact |
336 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
34624392 |
ca-ttaattactatagcattgttacatagacatgact |
34624357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 37565277 - 37565332
Alignment:
| Q |
3 |
ttgtttgtaatagtacgtgatttcttaataatgttggataaggtgtgcaaagagat |
58 |
Q |
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|||||||| || ||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
37565277 |
ttgtttgtgattgtacgcgatttcttggtaatgttggacaaggtgtgcaaagagat |
37565332 |
T |
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