View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_high_11 (Length: 330)
Name: NF11491_high_11
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 4861782 - 4861458
Alignment:
| Q |
7 |
ggagcacagataagtgagcaaaggggattgctagattattttgtcagtgtatgatatttggcatcttctttttaatttcctagccatacgtaccaaggtt |
106 |
Q |
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| T |
4861782 |
ggagcacaaataagtgagcaaaggggattgatagattattttgtcagtgcatgatatttggcatcttctttttaatttcctagccatacgtaccaaggtt |
4861683 |
T |
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| Q |
107 |
atagacccacttctgaatttgtttcgtgtacgtacgtacgtacgtggtt-gttactatagttttgatacatcatagatatgaatagggatggaatttaca |
205 |
Q |
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| T |
4861682 |
atagacccacttctgaatttgtttcgtgtacgtacgtacgtacgtggtttgttactatagttttgatacatcatagatatgaatagggatggaatttaca |
4861583 |
T |
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| Q |
206 |
ttttcttaattacaaattgcatataattaaaaattgagaagacgcacggatactcaattacagaatatatgaaagagaaagaaaaacgagacgtacggac |
305 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4861582 |
ttttcttaatgacaaattgcatataattaaaaattgagaagacgcacggatactcaattacagaatatatgaaagagaaagaaaaacgagacgtacggac |
4861483 |
T |
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| Q |
306 |
aagagatgggtagaggaaacacaac |
330 |
Q |
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| T |
4861482 |
aagagatgggtagaggaaacacaac |
4861458 |
T |
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