View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_high_14 (Length: 312)
Name: NF11491_high_14
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 14861288 - 14861544
Alignment:
| Q |
2 |
tcaacccaatatatgacattaattcaccaacttgacaacaacacctttatctcttagatttaacaaaatattaccgttcatcaaattgcacaaataggca |
101 |
Q |
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| T |
14861288 |
tcaacccaatatatgacattaattcaccaacttgacaacaacacctttatctcttagatttaacaaaatattaccgttcatcaaattgcacaaaaaggca |
14861387 |
T |
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| Q |
102 |
aaatatacatgttcatggaagaattttcttaccgaacatatcacaaattggcataaggcttaacaatacgttcaaatcaagcagccccaatcgaaccaaa |
201 |
Q |
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| T |
14861388 |
aaataaacatgttcatggaagaattttcttaccgaacatatcacaaattggcataaggcttaacaatacgttcaaatcaagcagccccaatcgaaccaaa |
14861487 |
T |
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| Q |
202 |
aacaaacctttcacaaggatggtggcggaagctccgaaccctagtagagcggcactc |
258 |
Q |
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| T |
14861488 |
aacaaacctctcacaaggatggtggcggaagctccgaaacctagtagagcggcactc |
14861544 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 9239670 - 9239715
Alignment:
| Q |
20 |
ttaattcaccaacttgacaacaacacctttatctc-ttagatttaa |
64 |
Q |
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| T |
9239670 |
ttaattcaccaacttgacaacaacacctttatctctttagatttaa |
9239715 |
T |
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