View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_high_5 (Length: 512)
Name: NF11491_high_5
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 34754872 - 34755351
Alignment:
| Q |
20 |
agtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaagtccattcagttgacacag |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754872 |
agtccatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaagtccattcagttgacacag |
34754971 |
T |
|
| Q |
120 |
ccgtggaatctgtccccgcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754972 |
ccgtggaatctgtccccgcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatag |
34755071 |
T |
|
| Q |
220 |
tacatacacataacttaccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755072 |
tacatacacataacttaccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacact |
34755171 |
T |
|
| Q |
320 |
attgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttcct |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755172 |
attgatcgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttcct |
34755271 |
T |
|
| Q |
420 |
tggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgccctct |
499 |
Q |
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| T |
34755272 |
tggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgccctct |
34755351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 307 - 495
Target Start/End: Complemental strand, 34780977 - 34780789
Alignment:
| Q |
307 |
aatacttaacactattgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaagaccc |
406 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||| || || ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34780977 |
aatacttaacaccgttgattaatggaatttaaattaattagaatgtatttataagataagaaacaaagacaatcagaagaaacttaccacaacaagaccc |
34780878 |
T |
|
| Q |
407 |
ttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgcc |
495 |
Q |
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| T |
34780877 |
ttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgcc |
34780789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 34762857 - 34762992
Alignment:
| Q |
20 |
agtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaagtccattcagttgacacag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
34762857 |
agtctatcttttcccacaacagagtcaatctcttcttgtgctttcttccatactcttggattgttgatgagctctgccaaagtccattctgttgccacag |
34762956 |
T |
|
| Q |
120 |
ccgtggaatctgtccccgcagagaagaaatcctgca |
155 |
Q |
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| |||||||||||||| ||||||||||||||||||| |
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| T |
34762957 |
ctgtggaatctgtccctgcagagaagaaatcctgca |
34762992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 34781337 - 34781194
Alignment:
| Q |
20 |
agtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaagtccattcagttgacacag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
34781337 |
agtctatcttttcccacaacagagtcaatctcctctcgagctttcttcaacactctaggattattgatgagctctgataaagtccattctgtagacacgg |
34781238 |
T |
|
| Q |
120 |
ccgtggaatctgtccccgcagagaagaaatcctgcatacacaaa |
163 |
Q |
| |
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| ||||| ||||| || |||||||| ||||||||||||| |||| |
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| T |
34781237 |
cggtggagtctgttcctgcagagaaaaaatcctgcatacccaaa |
34781194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 386 - 495
Target Start/End: Original strand, 34763214 - 34763323
Alignment:
| Q |
386 |
aaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacac |
485 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |
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| T |
34763214 |
aaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacat |
34763313 |
T |
|
| Q |
486 |
tctgctcgcc |
495 |
Q |
| |
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|||||||||| |
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|
| T |
34763314 |
tctgctcgcc |
34763323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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