View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11491_high_8 (Length: 388)

Name: NF11491_high_8
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11491_high_8
NF11491_high_8
[»] chr1 (8 HSPs)
chr1 (19-380)||(28495869-28496230)
chr1 (255-380)||(36989342-36989467)
chr1 (256-380)||(12804511-12804635)
chr1 (256-380)||(42287119-42287243)
chr1 (256-380)||(4160379-4160503)
chr1 (256-380)||(12774939-12775063)
chr1 (256-380)||(50788819-50788943)
chr1 (254-332)||(31644056-31644134)
[»] chr8 (2 HSPs)
chr8 (256-380)||(5788723-5788847)
chr8 (316-380)||(33186737-33186801)
[»] chr7 (2 HSPs)
chr7 (256-380)||(40749392-40749516)
chr7 (274-380)||(44150818-44150924)
[»] chr2 (3 HSPs)
chr2 (253-380)||(42898300-42898427)
chr2 (254-380)||(40040791-40040917)
chr2 (256-380)||(38895857-38895981)
[»] chr4 (2 HSPs)
chr4 (254-380)||(22085504-22085630)
chr4 (256-329)||(30518148-30518221)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 28495869 - 28496230
Alignment:
Q  19 aactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495869 aactatcctttctgttcaaaatatcaacactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattca 28495968  T
Q  119 aaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgatttatcacagaaacaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28495969 aaacctaacactacatacatgattggaaaaacctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgatttatcacagaaacaa 28496068  T
Q  219 aagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496069 aagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatga 28496168  T
Q  319 gctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496169 gctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 28496230  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 36989467 - 36989342
Alignment:
Q  255 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 354  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  355 catttttcacatttccacttcttctc 380  Q
    || || |||||||||||||| |||||    
T  36989367 cacttatcacatttccactttttctc 36989342  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 12804511 - 12804635
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | ||||||||||||||||| |||||    
T  12804611 acttttcacatttccactttttctc 12804635  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 42287243 - 42287119
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  356 atttttcacatttccacttcttctc 380  Q
    |||||||||||||||||||||||||    
T  42287143 atttttcacatttccacttcttctc 42287119  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 4160503 - 4160379
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  356 atttttcacatttccacttcttctc 380  Q
    |||| ||||| ||||||||||||||    
T  4160403 atttctcacacttccacttcttctc 4160379  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 12775063 - 12774939
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | |||||||| ||||| || |||||    
T  12774963 acttttcacacttccattttttctc 12774939  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 50788819 - 50788943
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | || ||||| ||||| ||||||||    
T  50788919 acttatcacacttccatttcttctc 50788943  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 31644056 - 31644134
Alignment:
Q  254 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcaga 332  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  |||||||||||||||||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcaga 31644134  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 5788723 - 5788847
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | |||||||||||||||||||||||    
T  5788823 acttttcacatttccacttcttctc 5788847  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 33186801 - 33186737
Alignment:
Q  316 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 380  Q
    |||||||||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctc 33186737  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | || ||||| ||||| ||||||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 44150818 - 44150924
Alignment:
Q  274 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 373  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  374 tcttctc 380  Q
    |||||||    
T  44150918 tcttctc 44150924  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 42898427 - 42898300
Alignment:
Q  253 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 352  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  353 aacatttttcacatttccacttcttctc 380  Q
    | || || ||||||||||||||||||||    
T  42898327 agcacttgtcacatttccacttcttctc 42898300  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 380
Target Start/End: Complemental strand, 40040917 - 40040791
Alignment:
Q  254 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 353  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  354 acatttttcacatttccacttcttctc 380  Q
    ||| || ||||| ||||||||||||||    
T  40040817 acacttatcacacttccacttcttctc 40040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 38895857 - 38895981
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 355  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  356 atttttcacatttccacttcttctc 380  Q
    | || ||||| ||||||||||||||    
T  38895957 acttctcacacttccacttcttctc 38895981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 22085504 - 22085630
Alignment:
Q  254 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 353  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  354 acatttttcacatttccacttcttctc 380  Q
    ||| |||||||| ||||||||||||||    
T  22085604 acacttttcacacttccacttcttctc 22085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 30518148 - 30518221
Alignment:
Q  256 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatc 329  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatc 30518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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