View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_1 (Length: 898)
Name: NF11491_low_1
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Original strand, 18315698 - 18316492
Alignment:
| Q |
1 |
aatattcttaacgcaacaaacctacatatcaccgacacttcatattgaagatgtccattgtctgacacaaaaacctacacgacaccaccgatacacatgt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
18315698 |
aatattcttaacgcaacaaacctatatatcaccaacacttcatattgaaggtgtccattgtctgacacagaaacctacacgacaccactgataaacatgc |
18315797 |
T |
|
| Q |
101 |
gtttcactcaatcactattattttcttaaattattatggtgtctacctgtcgttatcagagtcgtgttcgtatttgtgcttcatagcaacaaactatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18315798 |
-tttcactcaatcactattattttcttaaattattatggtgtctacctgtcggtatcagtgtcgtgttcgtatttgtgcttcatagcaacaaactatcaa |
18315896 |
T |
|
| Q |
201 |
attaaacaaaacaaatcaaatcac----------atcagtgcctacgtgtcactatcagtatcatatccttgtatgttctacatagcaacaaactatcaa |
290 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18315897 |
attaaacaaaacaaatcaaatcacatcataaattatcagtgccta-gtgtcactatcagtatcgtatccttgtatgttctacatagcaacaaactatcaa |
18315995 |
T |
|
| Q |
291 |
attcaacaaaaagaaaatcatcgtcatcatatattattaatgtcgacgtctcaagctcagtatcgtgtatgtacttcatagcaacaaactatcaaactaa |
390 |
Q |
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|||||||||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
18315996 |
attcaacaaaaagaaaatcaccatcatcatatgttattaatgtccacatctcaagctcagtatcgtgtatgtacttcatagcagcaaactatcaaattaa |
18316095 |
T |
|
| Q |
391 |
at-taaaaaatcacatcataaattaccagtgccta-----------cgtgtcattatcagtattgtgtccgtgtatgtacttaatagccacaaaactatc |
478 |
Q |
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|| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |
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| T |
18316096 |
ataaaaaaaatcacatcataaattaccggtgcctacgtgtcattctcgtgtcattatcagtatcgtgtctgtgaatgtacttaatagccacaaaactatc |
18316195 |
T |
|
| Q |
479 |
aaattaattgaaaaaaccatcatcttatatcatcagtgtccacgcctgcgtgtcagtatcagtattgtatcatgcttcatagcaacaaacaatcaaattc |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18316196 |
aaattaattgaaaaaaccatcatcttatatcatcagtgtccacgcctgcgtgtcagtatcagtattgtatcatgcttcatagcaacaaacaatcaaattc |
18316295 |
T |
|
| Q |
579 |
aactaaaaatcatcaacatatattatcaaatccaataaa--ctctatnnnnnnnngtataaacttaccagtagtatgcaatacaaaacactcccaaaaat |
676 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18316296 |
aactaaaaatcatcaacatatattatcaaatcaaataaaatctctat-aaaaaaagtataaacttaccagtagtatgcaatacaaaacactcccaaaaat |
18316394 |
T |
|
| Q |
677 |
ccttgcaggtttgcgatgagcaaataaaggagcttcatgaagtatatccagaaatctacatcaacattaaaaataaagcttgattttgcatgcatcat |
774 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18316395 |
ccttgcaggtttgcgatgagcaaataaaggagcttcatgaagtatatccagaaatctacatcaaaattaaaaataaagcttgattttgcatgcatcat |
18316492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 4 - 519
Target Start/End: Original strand, 18305100 - 18305606
Alignment:
| Q |
4 |
attcttaacgcaacaaacctacatatcaccgacacttcatattgaagatgtccattgtctgacacaaaaacctacacgacaccaccgatacacatgtgtt |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| | ||| | |||||||| ||||||| | ||||| || || |
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| T |
18305100 |
attcttaacgcaacaatcctacatatcaccgacacttcatattgaagaagtccgttgaccgacg---acacctacacaacaccactggtacacgtga-tt |
18305195 |
T |
|
| Q |
104 |
tcactcaatcactattattttcttaaattattatggtgtctacctgtcgttatcagagtcgtgttcgtatttgtgcttcatagcaacaaactatcaaatt |
203 |
Q |
| |
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|| |||||||||||||||||||||||| ||| |||||||| ||||| |||||| || ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
18305196 |
tctttcaatcactattattttcttaaataatt---gtgtctacttgtcggtatcagggttgtgttagtatttgtgcttcatagcaacaaattatcaaatt |
18305292 |
T |
|
| Q |
204 |
aaacaaaacaaatcaaatcaca-----tcagtgcctacgtgtcactatcagtatcatatccttgtatgttctacatagcaacaaactatcaaattcaaca |
298 |
Q |
| |
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||| | || |||||| || | |||||||||| |||||||||||||||| ||||| |||||| || |||||||||||||||||| ||||||| |
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| T |
18305293 |
aaatataaaaaatcacgacataaattatcagtgcctatgtgtcactatcagtattgaatcctagtatgtgcttcatagcaacaaactatcacattcaacg |
18305392 |
T |
|
| Q |
299 |
aaaagaaaatcatcgtcatcatatattattaatgtcgacgtctcaagctcagtatcgtgtatgtacttcatagcaacaaactatcaaactaaattaaaaa |
398 |
Q |
| |
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|||| | |||||| ||||||||||||||||||||| | |||||| ||||||||| ||| ||||| ||||||||| ||||||| ||||| ||||| |
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| T |
18305393 |
aaaaaatcatcatcatcatcatatattattaatgtccatgtctca------gtatcgtgtttgtgcttcaaagcaacaaaatatcaaattaaat-aaaaa |
18305485 |
T |
|
| Q |
399 |
atcacatcataaattaccagtgcctacgtgtcattatcagtattgtgtccgtgtatgtacttaatagccacaaaactatcaaattaattgaaaaaaccat |
498 |
Q |
| |
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|||| ||||||||| | |||| ||||| ||||| ||||||||| |||||||| ||||||||| ||| | ||||||||||||||||| |||||| |||| |
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| T |
18305486 |
atcatatcataaatgatcagttcctacatgtcactatcagtatcgtgtccgtatatgtacttcataacaacaaaactatcaaattataagaaaaagccat |
18305585 |
T |
|
| Q |
499 |
catcttatatcatcagtgtcc |
519 |
Q |
| |
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|||||||||| |||||||||| |
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|
| T |
18305586 |
catcttatattatcagtgtcc |
18305606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 18316541 - 18316599
Alignment:
| Q |
823 |
ggagcgtgattactgacagagcgttttcttcttgagatgtgggtggccgagaagagaat |
881 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18316541 |
ggagcgtgattactgacagagcgttttcttcttgagatgtgggtggccgagaagagaat |
18316599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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