View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_10 (Length: 423)
Name: NF11491_low_10
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 24401130 - 24400756
Alignment:
| Q |
30 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcaggatatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
129 |
Q |
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| T |
24401130 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcag-atatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
24401032 |
T |
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| Q |
130 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccactcacactacccttcctttgtttttcaacaaaacactcacttaccaatata |
229 |
Q |
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| T |
24401031 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccacttacactacccttcctttgtttttcaacaaatcactcacttaccaatata |
24400932 |
T |
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| Q |
230 |
tatataataattgctagtaacacaagatggtacacacatatacatactctctcatttgcatttttctgcaatcctttcctctcctccaaatacacttgag |
329 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24400931 |
tatataataattgctagtaacacaagacggtacaaacatatacatactctctcatttgcatttttctgcaatccttttctctcctccaaatacac-tgag |
24400833 |
T |
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| Q |
330 |
tt-ctaggtttatg-ttcatgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaag |
404 |
Q |
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|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24400832 |
ttcctaggtttatgtttcctgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaag |
24400756 |
T |
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