View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_11 (Length: 406)
Name: NF11491_low_11
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 46642112 - 46641726
Alignment:
| Q |
1 |
tcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46642112 |
tcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttca |
46642013 |
T |
|
| Q |
101 |
gaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46642012 |
gaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggcgacggtagaggaaggtgagcatggcctaaag |
46641913 |
T |
|
| Q |
201 |
acaaatgatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgatataa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641912 |
acaaatgatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgatataa |
46641813 |
T |
|
| Q |
301 |
atccgaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagta |
387 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641812 |
atctgaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagta |
46641726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 46619952 - 46620326
Alignment:
| Q |
7 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
106 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||| |||||||||| |||| ||| | ||||||| || ||||||| ||||||| ||||||| |||| |
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| T |
46619952 |
cttcttcagcagacagaagtgtggaagaggataatggaaaaagcattatcaacgacagctatcaacacacgagtgtttcttgtgtcaaagttgaaaaatc |
46620051 |
T |
|
| Q |
107 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
206 |
Q |
| |
|
|||| | ||||||||||| ||| |||| |||||||| |||| ||||| ||||||| ||| | || || |||| |||||| ||||||| | |||| |
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| T |
46620052 |
tgaatctttcaccttcaacatacctcaggtaccatcgaattctgaaaatagcaaaacagtggcaatggcagctgaagatgagcaaggcctaacggcaaaa |
46620151 |
T |
|
| Q |
207 |
gatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgatataaatccga |
306 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| |||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||| ||||||| |
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| T |
46620152 |
aatccatgtctaacatatgcttctcaggaagtagttaaggagcctttgagaatcccttgtgatgttggttctttggaacaacagcctgatatgaatccga |
46620251 |
T |
|
| Q |
307 |
ggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgc |
381 |
Q |
| |
|
||||||| ||| |||| |||||| | | || |||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
46620252 |
ggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgc |
46620326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 46638670 - 46639044
Alignment:
| Q |
7 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
106 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || | |||||||||| |||| || | |||||||||| ||||||| |||||||| ||||||| |||| |
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|
| T |
46638670 |
cttcttcagcagacagaagtgtggaagaggatgacagaaaaagcattatcaacaacagctatcaacgcacgagtgtttcttgtgttaaagttgaaaaatc |
46638769 |
T |
|
| Q |
107 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
206 |
Q |
| |
|
|||| | ||||||||||| ||| ||| |||||||| |||| ||||| ||||||| | | | || || ||| |||||| ||||||||| |||| |
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|
| T |
46638770 |
tgaatctttcaccttcaacatacctcaggcaccatcgaagtctgaaaatagcaaaacagtagcaatggcagccgaaaatgagcaaggcctaaaggcaaaa |
46638869 |
T |
|
| Q |
207 |
gatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgatataaatccga |
306 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||| ||||||| |
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|
| T |
46638870 |
gatccatgtctaacatctgcttctcaggaagtagttcaggagcctttgagaatcccttgtgatgttggttctttggaacaacagcctgatatgaatccga |
46638969 |
T |
|
| Q |
307 |
ggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgc |
381 |
Q |
| |
|
||||||| ||| |||| |||||| | | || |||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
46638970 |
ggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgc |
46639044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 197 - 379
Target Start/End: Complemental strand, 46173144 - 46172962
Alignment:
| Q |
197 |
aaagacaaatgatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgat |
296 |
Q |
| |
|
|||| |||| |||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||| |
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|
| T |
46173144 |
aaaggcaaaagatccatgtctaacagctgccactcaggaagtagttgaggagcctctgagaatcccttgtgatgttggttctttggaacaacagcctgat |
46173045 |
T |
|
| Q |
297 |
ataaatccgaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgt |
379 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
46173044 |
ataaatcccaggagacagagcactagaaacagaccgttgacagttagagcattggaatgtatagcaaatgaatatttgcatgt |
46172962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 46630445 - 46630823
Alignment:
| Q |
3 |
actgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgaga |
102 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||| || |||||| | ||| |||||| |||||||| || |||||| |
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|
| T |
46630445 |
actgcttcttcagcaaacagaaatgtggaagagaataatgaaaaaaacattctcaatgatagttatcgatgcatgagtgtctcttgtgttaaaattgaga |
46630544 |
T |
|
| Q |
103 |
aatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagac |
202 |
Q |
| |
|
|||| | || | || | | |||| ||| ||||||| ||||| |||| ||||| |||| |||| | ||| || |||| |||| || |||||| | |
|
|
| T |
46630545 |
aatgtgagtctttcagcattaacataccgcaggttccttcgaattctgaaaatagaaaaatgatggcaatggtggaagaagccaagcaggggctaaaggc |
46630644 |
T |
|
| Q |
203 |
aaatgatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatgttgattctttggaaaaacaggctgatataaat |
302 |
Q |
| |
|
||| |||||| |||| ||||||| |||||| ||| |||||||||||||| ||||| ||||||||||||| ||| |||||| ||||| ||||||||||| |
|
|
| T |
46630645 |
aaaagatccacgtctcgcatctgttactcaagaaacagttgaggagcctcatagaactccttgtgatgttggttcgttggaacaacagcctgatataaat |
46630744 |
T |
|
| Q |
303 |
ccgaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgc |
381 |
Q |
| |
|
||||||||||| |||| |||||| ||| | ||||||||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
46630745 |
ccgaggagacagagcaatagaaaaagaccattgacagttagagcattggaatatatagcaaatgaattcttgcatgtgc |
46630823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 15768306 - 15768114
Alignment:
| Q |
171 |
acggtagaggaaggtgagcatggcctaaagacaaatgatccatgtctagcatctgctactcaggaagtagttgaggagcctctgagaacaccttgtgatg |
270 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||| |||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
15768306 |
acggtggaggaaggcgagcaacgcctaaaggaaaaagatccatgtctaacagctgccactcaggaagtagttgagttgcctctgagaacc------gatg |
15768213 |
T |
|
| Q |
271 |
ttgattctttggaaaaacaggctgatataaatccgaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaat |
369 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||| |
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|
| T |
15768212 |
ttggttatttggaaaaacagcctgatataaatcctaggcgacaaagcactagaaacagaccgttgacagttagagcattagaatgtatagcaaatgaat |
15768114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 18375639 - 18375536
Alignment:
| Q |
3 |
actgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgaga |
102 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||| |||| | ||||| ||| ||| |||||| | ||| |||||| |||||||| || |||||| |
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|
| T |
18375639 |
actgcttcttcagcaaacagaaatgtggaagagaataataaaaacaacattcacaatgacagttatcgatgcatgagtgtctcttgtgttaaaattgaga |
18375540 |
T |
|
| Q |
103 |
aatg |
106 |
Q |
| |
|
|||| |
|
|
| T |
18375539 |
aatg |
18375536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 1537732 - 1537797
Alignment:
| Q |
262 |
cttgtgatgttgattctttggaaaaacaggctgatataaatccgaggagacaaagcactagaaaca |
327 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
1537732 |
cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaaca |
1537797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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