View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11491_low_18 (Length: 316)

Name: NF11491_low_18
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11491_low_18
NF11491_low_18
[»] chr8 (8 HSPs)
chr8 (194-305)||(35839184-35839295)
chr8 (40-157)||(22816217-22816335)
chr8 (26-157)||(40841331-40841461)
chr8 (195-288)||(22816373-22816466)
chr8 (18-89)||(35840597-35840668)
chr8 (95-145)||(35839344-35839394)
chr8 (20-62)||(22816173-22816216)
chr8 (256-299)||(22816459-22816502)
[»] chr2 (7 HSPs)
chr2 (194-305)||(1193681-1193792)
chr2 (33-157)||(44788725-44788850)
chr2 (18-110)||(1193862-1193954)
chr2 (195-245)||(44788637-44788687)
chr2 (209-299)||(29270722-29270811)
chr2 (123-157)||(1193829-1193863)
chr2 (45-75)||(1193971-1194001)
[»] chr4 (3 HSPs)
chr4 (18-157)||(69504-69645)
chr4 (195-288)||(69373-69466)
chr4 (256-299)||(69337-69380)
[»] chr5 (3 HSPs)
chr5 (18-157)||(6308876-6309016)
chr5 (195-274)||(6308759-6308838)
chr5 (208-299)||(27026708-27026801)
[»] chr7 (5 HSPs)
chr7 (18-157)||(9993506-9993652)
chr7 (194-301)||(11036377-11036487)
chr7 (19-157)||(11036192-11036340)
chr7 (220-305)||(9993374-9993457)
chr7 (22-132)||(3691753-3691870)
[»] chr3 (4 HSPs)
chr3 (18-143)||(17542545-17542672)
chr3 (195-299)||(17542724-17542828)
chr3 (194-299)||(9104261-9104366)
chr3 (18-134)||(9104424-9104541)
[»] scaffold0013 (2 HSPs)
scaffold0013 (194-305)||(243090-243191)
scaffold0013 (61-157)||(242957-243053)
[»] chr1 (3 HSPs)
chr1 (33-157)||(6836121-6836247)
chr1 (256-305)||(21264708-21264757)
chr1 (195-230)||(6836056-6836091)
[»] chr6 (1 HSPs)
chr6 (223-299)||(24992502-24992578)
[»] scaffold0413 (1 HSPs)
scaffold0413 (221-305)||(8923-9007)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 35839295 - 35839184
Alignment:
Q  194 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35839295 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaat 35839196  T
Q  294 tgttttcttctt 305  Q
    ||||||||||||    
T  35839195 tgttttcttctt 35839184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 22816217 - 22816335
Alignment:
Q  40 tatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcacattttcatctcttttcattctccttaattaatcaaaatctaac 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||||||    
T  22816217 tatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcattttttttaattaatcaaaatctaac 22816316  T
Q  139 atgtcttactcaacatcac 157  Q
    ||||| | |||| ||||||    
T  22816317 atgtccttctcagcatcac 22816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 40841331 - 40841461
Alignment:
Q  26 catacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaat-aatctcacattttcatctcttttcattctccttaatt 124  Q
    |||||||||||||||||||  |||||||||||| ||||||||||| ||| | |||||||||| || |||||||||||||||||||||||| |||||| ||    
T  40841331 catacagaaataattatat--ctcacatcaccaagaacatgatcaaaaatagtcttttcaatcaaactcacattttcatctcttttcattttccttagtt 40841428  T
Q  125 aatcaaaatctaacatgtcttactcaacatcac 157  Q
    ||||||||||||||||  ||| |||| ||||||    
T  40841429 aatcaaaatctaacataactttctcagcatcac 40841461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 22816373 - 22816466
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatatt 288  Q
    |||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  22816373 cattccacatcacattatatacaactatcatataaaactcgattaaaataatcactcttataaaatattagattttaccacgtaagaaaatatt 22816466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35840668 - 35840597
Alignment:
Q  18 aaaggcaccatacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa 89  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  35840668 aaaggcacgacacagaaataattatatatctcacatcaccatgaacacgatcaaaaacaatcttttcaataa 35840597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 35839394 - 35839344
Alignment:
Q  95 cattttcatctcttttcattctccttaattaatcaaaatctaacatgtctt 145  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35839394 catttccatctcttttcattttccttaattaatcaaaatctaacatgtctt 35839344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 22816173 - 22816216
Alignment:
Q  20 aggcaccatacagaaa-taattatatatctcacatcaccatgaa 62  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  22816173 aggcaccacacagaaaataattatatatctcacatcaccatgaa 22816216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 22816459 - 22816502
Alignment:
Q  256 aaaatattagattttaccatgtaaataaatattttaattgtttt 299  Q
    |||||||||||||||||||  |||| ||||||||||||||||||    
T  22816459 aaaatattagattttaccacataaaaaaatattttaattgtttt 22816502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 1193792 - 1193681
Alignment:
Q  194 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1193792 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaat 1193693  T
Q  294 tgttttcttctt 305  Q
    ||||||||||||    
T  1193692 tgttttcttctt 1193681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 44788850 - 44788725
Alignment:
Q  33 aaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcacattttcatctcttttcattctccttaattaatcaaa 131  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  44788850 aaataattatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcatttttcttaattaatcaaa 44788751  T
Q  132 atctaacatgtcttactcaacatcac 157  Q
    |||||||||||| | |||| ||||||    
T  44788750 atctaacatgtccttctcagcatcac 44788725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 1193954 - 1193862
Alignment:
Q  18 aaaggcaccatacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataatctcacattttcatctctttt 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1193954 aaaggcaccacacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataatctcatattttcatctctttt 1193862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 44788687 - 44788637
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataa 245  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  44788687 cattccacatcacatcatacacaactatcttataaaactcaattaaaataa 44788637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 29270811 - 29270722
Alignment:
Q  209 tcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgtttt 299  Q
    |||||||||| ||||| |||||  | |||||||||||| | | ||||||||||||| ||||||| |||||| || ||||||||||||||||    
T  29270811 tcatacacaaatatcaaataaatat-aattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttt 29270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 1193863 - 1193829
Alignment:
Q  123 ttaatcaaaatctaacatgtcttactcaacatcac 157  Q
    ||||||||||||||||||||||| |||||||||||    
T  1193863 ttaatcaaaatctaacatgtctttctcaacatcac 1193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 1194001 - 1193971
Alignment:
Q  45 atctcacatcaccatgaacatgatcataaac 75  Q
    |||||||||||||||||||||||||||||||    
T  1194001 atctcacatcaccatgaacatgatcataaac 1193971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 69645 - 69504
Alignment:
Q  18 aaaggcaccatacagaaa-taattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcacattttcatctcttttcattc 115  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||     
T  69645 aaaggcaccacacagaaaataattatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcattt 69546  T
Q  116 tccttaattaatcaaaatctaacatgtcttactcaacatcac 157  Q
    |||||||||||||||||||||||||||| | |||| ||||||    
T  69545 tccttaattaatcaaaatctaacatgtccttctcagcatcac 69504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 69466 - 69373
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatatt 288  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||    
T  69466 cattccacatcacatcatacacaactatcatataaaactcaattaaaataatcacttttataaaatattagattttaccacgtaagaaaatatt 69373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 69380 - 69337
Alignment:
Q  256 aaaatattagattttaccatgtaaataaatattttaattgtttt 299  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||    
T  69380 aaaatattagattttaccacgtaagaaaatattttaattgtttt 69337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 6309016 - 6308876
Alignment:
Q  18 aaaggcaccatacagaaa-taattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataat-ctcacattttcatctcttttcattc 115  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||     
T  6309016 aaaggcaccacacagaaaataattatatatctcacatcaccatgaacatgatca-aaacaatcttttcaataagactcacattttcatctcttttcattt 6308918  T
Q  116 tccttaattaatcaaaatctaacatgtcttactcaacatcac 157  Q
    |||||||||||||||||||||||||||| | |||| ||||||    
T  6308917 tccttaattaatcaaaatctaacatgtccttctcagcatcac 6308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 6308838 - 6308759
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttacca 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6308838 cattccacatcacatcatacacaactatcatataaaactcaattaaaataatcacttttataaaatattagattttacca 6308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 27026801 - 27026708
Alignment:
Q  208 atcatacacaactatcatataaaactcaattaaaataatcactc-ttat-aaaatattagattttaccatgtaaataaatattttaattgtttt 299  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||| ||||| |||||| |||||||||||    
T  27026801 atcatacacaactatcatataaaaatcaattaaaataatcactctttataaaaaaattagattttaccacgtaaagaaatatattaattgtttt 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 9993652 - 9993506
Alignment:
Q  18 aaaggcaccatacagaaataattatatatctcacatcaccat------gaacatgatcataaacaatcttttcaataat-ctcacattttcatctctttt 110  Q
    |||||||||| |||||||||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  9993652 aaaggcaccacacagaaataattatatatctcacatcaccatcaccatgaacatgatcaaaaacaatcttttcaataaaactcacattttcatctctttt 9993553  T
Q  111 cattctccttaattaatcaaaatctaacatgtcttactcaacatcac 157  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  9993552 cattttccttaattaatcaaaatctaacatgtctttctcagcatcac 9993506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 11036377 - 11036487
Alignment:
Q  194 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaata---aatatttt 290  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||    
T  11036377 tcattccgcatcacatcacacacaactatcatataaaactcaattaaaataatcattcttataaaatattagattttaccatgtaaataaataatatttt 11036476  T
Q  291 aattgttttct 301  Q
    |||||||||||    
T  11036477 aattgttttct 11036487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 11036192 - 11036340
Alignment:
Q  19 aaggcaccatacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaat----------aatctcacattttcatctctt 108  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||          || ||||||||||||||||||    
T  11036192 aaggcaccacacagaaataactatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaatgaaacattgaaaactcacattttcatctctt 11036291  T
Q  109 ttcattctccttaattaatcaaaatctaacatgtcttactcaacatcac 157  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  11036292 ttcattttccttaattaatcaaaatctaacatgtctttctcagcatcac 11036340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 9993457 - 9993374
Alignment:
Q  220 tatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttctt 305  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9993457 tatcatataaaactcaattaaaa--atcactcttataaaatattagattttaccatataaataaatattttaattgttttcttctt 9993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 3691870 - 3691753
Alignment:
Q  22 gcaccatacagaaataattatatatctcacatcaccatgaacatgatcat------aaacaatcttttcaat-aatctcacattttcatctcttttcatt 114  Q
    |||||| | ||||||||||||||||||||||| | ||||||||||| |||      |||||||||||||||| || |||||| ||||||||||||||  |    
T  3691870 gcaccacatagaaataattatatatctcacataatcatgaacatgaacatgatcaaaaacaatcttttcaataaaactcacactttcatctcttttccct 3691771  T
Q  115 ctccttaattaatcaaaa 132  Q
     |||||||||||| ||||    
T  3691770 ttccttaattaataaaaa 3691753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 17542545 - 17542672
Alignment:
Q  18 aaaggcaccatacagaaa-taattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcacattttcatctcttttcattc 115  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||     
T  17542545 aaaggcaccacacagaaaataattatatatctaacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcattt 17542644  T
Q  116 tccttaattaatcaaaatctaacatgtc 143  Q
    ||||||||||||||||||||||||||||    
T  17542645 tccttaattaatcaaaatctaacatgtc 17542672  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 17542724 - 17542828
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaatt 294  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||  |||||||||||||    
T  17542724 cattccacatcacatcatacacaactatcatataaaactcaattaaaataaccactcttagaaaatattagattttaccacgtaagaaaatattttaatt 17542823  T
Q  295 gtttt 299  Q
    |||||    
T  17542824 gtttt 17542828  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 9104366 - 9104261
Alignment:
Q  194 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaat 293  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||  | || ||||||||| ||    
T  9104366 tcattccacatcacaacatacacaactatcatataagactcaattaaaataatcaatcttataaaatattagattttaccacattaagaaatatttttat 9104267  T
Q  294 tgtttt 299  Q
    ||||||    
T  9104266 tgtttt 9104261  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 9104541 - 9104424
Alignment:
Q  18 aaaggcaccatacagaaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaat-aatctcacattttcatctcttttcattct 116  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||| | |||||||||| || ||||||||| |||||||||||||| |    
T  9104541 aaaggcaccacacagaaataattatatatctcacatcaccaagaacatgatccaaaatagtcttttcaatcaaactcacatttccatctcttttcatttt 9104442  T
Q  117 ccttaattaatcaaaatc 134  Q
    | ||| ||||||||||||    
T  9104441 cattagttaatcaaaatc 9104424  T

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Target: scaffold0013 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 243090 - 243191
Alignment:
Q  194 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  243090 tcattccgcatcacatcatacacaactatcatataaaactcaattaaaataatcactcttataaaatatt----------atgtaaataaatattttaat 243179  T
Q  294 tgttttcttctt 305  Q
    ||||||||||||    
T  243180 tgttttcttctt 243191  T

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Target: scaffold0013; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 242957 - 243053
Alignment:
Q  61 aacatgatcataaacaatcttttcaataat-ctcacattttcatctcttttcattctccttaattaatcaaaatctaacatgtcttactcaacatcac 157  Q
    |||||||||| ||||||||||| ||||||  |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||    
T  242957 aacatgatcaaaaacaatcttt-caataaaactcacattttcatctcttttcattttccttaattagtcaaaatctaacatgtctttctcagcatcac 243053  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 6836247 - 6836121
Alignment:
Q  33 aaataattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcacattttcatctctttt-cattctccttaattaatcaa 130  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||||| | || |||||||||||||||    
T  6836247 aaatatttatatatctcacatcaccatgaatatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcctttttccttaattaatcaa 6836148  T
Q  131 aatctaacatgtcttactcaacatcac 157  Q
    ||||||||||||| | |||| ||||||    
T  6836147 aatctaacatgtccttctcagcatcac 6836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 21264708 - 21264757
Alignment:
Q  256 aaaatattagattttaccatgtaaataaatattttaattgttttcttctt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264708 aaaatattagattttaccatgtaaataaatattttaattgttttcttctt 21264757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 6836091 - 6836056
Alignment:
Q  195 cattccgcatcacatcatacacaactatcatataaa 230  Q
    |||||| |||||||||||||||||||||||||||||    
T  6836091 cattccacatcacatcatacacaactatcatataaa 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 24992578 - 24992502
Alignment:
Q  223 catataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgtttt 299  Q
    ||||||||||| |||||||||||||| | |||||||| | || ||||||||| ||||| ||||||||||||||||||    
T  24992578 catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt 24992502  T

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Target: scaffold0413 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 9007 - 8923
Alignment:
Q  221 atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttctt 305  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| |||||||||||| |||  |||||||| ||||||| |||||    
T  9007 atcatataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttctt 8923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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