View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_19 (Length: 314)
Name: NF11491_low_19
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 40638166 - 40638472
Alignment:
| Q |
1 |
catccaaatcctccaccactcccacacaccactggtggattaaaaagcccaacccatgccgttgtcgacccgtttggcccaaatgggctttcttccgtag |
100 |
Q |
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| T |
40638166 |
catccaaatcctccaccactcccacacaccactggtggattaaaaagcccaacccatgccgttgtcgactcgtttggcccaaatgggctttcttccgtag |
40638265 |
T |
|
| Q |
101 |
nnnnnnnccaactaaacctaaacaagattcagttaaatcagagtctaacagaaatagtaatttcaccctagaagatgaacaaagagttagtgttagtgtt |
200 |
Q |
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| T |
40638266 |
aaaaaaaccaactaaacctaaacaagattcagttaaatcagagtctaacagaaatagtaatttcaccctagaagatgaacaaagagttagtgttagtgtt |
40638365 |
T |
|
| Q |
201 |
gaatctgttgataatgctattgtttcaaattcaaattgttctactcctccgaaaaacgctttgttattaacaaggtgtagatccgctccatacagatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40638366 |
gaatctgttgataatgctattgtttcaaattcaaattgttctactcctccgaaaaacgctttgttattaacaaggtgtagatccgctccatacagatctt |
40638465 |
T |
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| Q |
301 |
catctct |
307 |
Q |
| |
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||||||| |
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| T |
40638466 |
catctct |
40638472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 45535879 - 45535941
Alignment:
| Q |
245 |
tcctccgaaaaacgctttgttattaacaaggtgtagatccgctccatacagatcttcatctct |
307 |
Q |
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| T |
45535879 |
tcctccgaaaaacgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctct |
45535941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 27557100 - 27557162
Alignment:
| Q |
245 |
tcctccgaaaaacgctttgttattaacaaggtgtagatccgctccatacagatcttcatctct |
307 |
Q |
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|||||||||||||||||| |||||| |||||||||| || ||||||| |||||||||||| |
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| T |
27557100 |
tcctccgaaaaacgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctct |
27557162 |
T |
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