View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_29 (Length: 229)
Name: NF11491_low_29
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_29 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 38312789 - 38313012
Alignment:
| Q |
6 |
agattccacagttggacaaggtcatttagcatctaacagaaatttacatcaaatagaatttcctatatcatcttcaattagcagctctaaaaacagtaag |
105 |
Q |
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| T |
38312789 |
agattccacagttggacaaggtcatttagcatctaacagaaatttacatcaaatagaatttcctatatcatcttcaattagcagctctaaaaacagtaag |
38312888 |
T |
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| Q |
106 |
tagagagaggaagaggttgatgacatctagatataaggagacagaagcccagatatactcatcataggagtacctcttgataaggttgtctgtgtcatag |
205 |
Q |
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| T |
38312889 |
tagagagaggaagaggttgatgacatctagatataaggagacagaagcccagatatactcatcataggagtacctcttgataaggttgtctgtgtcatag |
38312988 |
T |
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| Q |
206 |
acaatgtagccagaaaatataata |
229 |
Q |
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| T |
38312989 |
acaatgtagccagaaaatataata |
38313012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 38280024 - 38280140
Alignment:
| Q |
115 |
gaagaggttgatgacatctagatataaggagacagaagcccagatatactcatcataggagtacctcttgataaggttgtctgtgtcatag--acaatgt |
212 |
Q |
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| T |
38280024 |
gaagaggttgatgatgtccagatacaaggaaaccgaagccaaaatgtattgatcatatgagaacctctcgataaggttgtatgtgtcatagacacaatgt |
38280123 |
T |
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| Q |
213 |
agccagaaaatataata |
229 |
Q |
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| T |
38280124 |
agccagaaaatataata |
38280140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 38271358 - 38271463
Alignment:
| Q |
124 |
gatgacatctagatataaggagacagaagcccagatatactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaat |
223 |
Q |
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| T |
38271358 |
gatgacgtttagatacaaggaaatcgaagccaaaatgtactcatcatttgagaacctcttgttaaggttgtccgtgtcaatgaaaatgtagccataaaat |
38271457 |
T |
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| Q |
224 |
ataata |
229 |
Q |
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|||||| |
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| T |
38271458 |
ataata |
38271463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 45584766 - 45584727
Alignment:
| Q |
165 |
catcataggagtacctcttgataaggttgtctgtgtcata |
204 |
Q |
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| T |
45584766 |
catcataggagaacctcttgataaggttgtttgtgtcata |
45584727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 38275146 - 38275214
Alignment:
| Q |
161 |
tactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataata |
229 |
Q |
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| T |
38275146 |
tactcatcatttgagaacttcttgttaaggttgtctgtgtcaacgaaaatgtggccataaaatataata |
38275214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 31701427 - 31701284
Alignment:
| Q |
85 |
agcagctctaaaaacagtaagtagagagaggaagaggttgatgacatctagatataaggagacagaagcccagatatactcatcataggagtacctcttg |
184 |
Q |
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||||||||| |||| ||| || | ||| ||||| |||||||||| || | ||||||||||||||||||||| || | |||||||| ||||| |||||| |
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| T |
31701427 |
agcagctctgaaaatagtgagcaaagacaggaaaaggttgatgatgtccaaatataaggagacagaagcccaaatgaattcatcataagagtatctcttg |
31701328 |
T |
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| Q |
185 |
ataaggttgtctgtgtcatagacaatgtagccagaaaatataat |
228 |
Q |
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| T |
31701327 |
atcaagttgtctgtatcatataggatgtagccacaaaatataat |
31701284 |
T |
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