View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_4 (Length: 566)
Name: NF11491_low_4
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 29280949 - 29280492
Alignment:
| Q |
19 |
catagataaacacttatgctataattgtttataggaaaccaactttcccnnnnnnnatatgatcttttgaaaacaaaagagnnnnnnnttgtgatacctg |
118 |
Q |
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| T |
29280949 |
catagataaacacttatgctataattgtttataggaaaccagctttccctttttttatatgatcttttgaaaacaaaagagaaaaaaattgtgatacctg |
29280850 |
T |
|
| Q |
119 |
agaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacatttgctcttctctttgttttcttggtaattgtattgcatata |
218 |
Q |
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| T |
29280849 |
agaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacgtttgctcttctctttgttttcttggtaattgtattgcatata |
29280750 |
T |
|
| Q |
219 |
gcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaagaaaatga |
318 |
Q |
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| T |
29280749 |
gcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaagaaaatga |
29280650 |
T |
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| Q |
319 |
gtacacatgatgcatgcatgacatttggtaactaaaatactagagaaaaatgtaaccaaacatgtacctctcattttcattattgatctttgaatcttct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29280649 |
gtacacatgatgcatgcatgacatttggtaactaaaaaactagacaaaaatgtaaccaaacatgtacctctcattttcattatagatctttgaatcttct |
29280550 |
T |
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| Q |
419 |
ttgcacatccaacacaatgcaaatccacaaaaagcacacatggttctggtggtttagg |
476 |
Q |
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| T |
29280549 |
ttgcacatccaacacaatgcaaatccacaaaaagtacacatggttctggtggtttagg |
29280492 |
T |
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Back To:
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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 111 - 315
Target Start/End: Original strand, 42525632 - 42525834
Alignment:
| Q |
111 |
gatacctgagaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacatttgctcttctctttgttttcttggtaattgtat |
210 |
Q |
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||||||||||| || ||||||||||| | ||| |||||||||||| ||||||||||||||||| || || |||||||||||||||| || || ||| |
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| T |
42525632 |
gatacctgagagttaacaacttctggtataggctctccttctgcttctggcaatggagatataactttggccattctctttgttttctttgttataatat |
42525731 |
T |
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| Q |
211 |
tgcatatagcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaa |
310 |
Q |
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|||| || ||||||| |||||||| || |||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||| ||| |
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| T |
42525732 |
tgcagattccttgaggatccactattccctttatgaccacttcatttttagccatatcaatcaccactccctcaactcctgtt--aagataaacaaaaat |
42525829 |
T |
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| Q |
311 |
gaaaa |
315 |
Q |
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||||| |
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| T |
42525830 |
gaaaa |
42525834 |
T |
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