View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11491_low_5 (Length: 561)

Name: NF11491_low_5
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11491_low_5
NF11491_low_5
[»] chr8 (2 HSPs)
chr8 (18-238)||(33536427-33536661)
chr8 (446-515)||(34937720-34937787)
[»] chr6 (3 HSPs)
chr6 (480-557)||(31036950-31037027)
chr6 (298-369)||(31037144-31037215)
chr6 (156-210)||(31037318-31037372)
[»] chr5 (1 HSPs)
chr5 (453-516)||(39595809-39595870)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33536661 - 33536427
Alignment:
Q  18 ggagcaatgttgaagttgtagggaatacacttcagcaatagcatatgtttgttgtaaacgacgcagctgatggaattgagcaggaggcggaagggttg-- 115  Q
    |||||||||||||||| | | ||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||      
T  33536661 ggagcaatgttgaagtagcaaggaatacacttcagcaatagcatgtgtatgatgtaaacgacgcagctgatgaaattgagcaggaggcggaagggttgac 33536562  T
Q  116 --gcttttccccatacagagcgacaaagccattgtcca----------gatcgaaagggaattttcaaattcctagtgaattactgggatacgaaggagt 203  Q
      | || |||||||||||| ||||||||||||||||||          |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||    
T  33536561 ttgtttgtccccatacagaacgacaaagccattgtccagatataacttgatcgaaagggaattttcaaatccctagtgaattgctgggatacaaagtagt 33536462  T
Q  204 tgaccttatcgacaacaatgacacgtcaaattgga 238  Q
    |||||||||||||||||||||||||||||||||||    
T  33536461 tgaccttatcgacaacaatgacacgtcaaattgga 33536427  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 515
Target Start/End: Complemental strand, 34937787 - 34937720
Alignment:
Q  446 ttctctaatgttttgcgaatttcagcaggtgttccaactaaggtaccaaacaagctttaagaaacttgac 515  Q
    |||||||| ||||| | ||||||||||||| ||||  ||||||||||  ||| |||||||||||||||||    
T  34937787 ttctctaacgttttccaaatttcagcaggtattcctgctaaggtacc--acaggctttaagaaacttgac 34937720  T

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Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 31037027 - 31036950
Alignment:
Q  480 caactaaggtaccaaacaagctttaagaaacttgaccaaaccttaatgtcacataatccaactttgtctctgcttctc 557  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  31037027 caactaaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtctcagcttctc 31036950  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 31037215 - 31037144
Alignment:
Q  298 gatgcttaggtttcacacaaatgttttccacactagcatgtgacgtgaaaagagatattgtcaagtattgtt 369  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||    
T  31037215 gatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgtt 31037144  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 31037372 - 31037318
Alignment:
Q  156 gaaagggaattttcaaattcctagtgaattactgggatacgaaggagttgacctt 210  Q
    |||||||||||||||||| ||| | ||||| ||||||||| ||| ||||||||||    
T  31037372 gaaagggaattttcaaatccctggagaattgctgggatacaaagtagttgacctt 31037318  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 39595870 - 39595809
Alignment:
Q  453 atgttttgcgaatttcagcaggtgttccaactaaggtaccaaacaagctttaagaaacttgacc 516  Q
    |||||||||| |||||||||||||||||  |||  |||||  ||||||||||||||||||||||    
T  39595870 atgttttgcgtatttcagcaggtgttcctgctattgtacc--acaagctttaagaaacttgacc 39595809  T

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