View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11491_low_6 (Length: 528)
Name: NF11491_low_6
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11491_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 6921402 - 6921170
Alignment:
| Q |
15 |
caatttgaaaatatggtttgtgtggatattagatatatatgagggaactcaaagattgagctgagatggggttgggatttgaggattcaaatgagtttat |
114 |
Q |
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| T |
6921402 |
caatttgaaaatatggtttgtggggatat-------atatgggggaactcaaagattgagctgagatggggttgggatttgaggattcaaatgagtttat |
6921310 |
T |
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| Q |
115 |
agaaagggagggtttgttgggttgtgtaaaggaagagggggaagatcaaacatagttttgaagatggagaatatgaaaatgaagatgcagccatcataaa |
214 |
Q |
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| T |
6921309 |
agaaagggagggtttgttgggttgtgtaaaggaagagggggaagatcaaacatagttttgaagatggagaatatgaaaatgaagatgcagccatcataaa |
6921210 |
T |
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| Q |
215 |
tttgaaagaaaaaggggaaaagcttaggtgagtttgaaaga |
255 |
Q |
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| T |
6921209 |
tttgagagaaaaaggggaaaagc-taggtgagtttgaaaga |
6921170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 6921057 - 6920961
Alignment:
| Q |
294 |
ctacatattttaatgaatatttaatattttcttatggaagtgtcattcactcattcctttgtaatacctcttaagtttagatatcaaaatgagtact |
390 |
Q |
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| T |
6921057 |
ctacatattttaatgaatttttaatattttttcatggaagtgccatttactcattcctttgtaatacctcttaattttagatatcaaaatgagtact |
6920961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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