View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11491_low_8 (Length: 510)

Name: NF11491_low_8
Description: NF11491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11491_low_8
NF11491_low_8
[»] chr4 (4 HSPs)
chr4 (12-174)||(15879416-15879578)
chr4 (177-303)||(15567000-15567129)
chr4 (177-303)||(15579645-15579774)
chr4 (238-293)||(18216542-18216597)
[»] scaffold0770 (2 HSPs)
scaffold0770 (12-170)||(1469-1626)
scaffold0770 (241-294)||(1760-1812)
[»] scaffold0029 (4 HSPs)
scaffold0029 (12-170)||(99773-99930)
scaffold0029 (225-294)||(21049-21116)
scaffold0029 (225-294)||(34790-34857)
scaffold0029 (241-294)||(100064-100116)
[»] chr8 (2 HSPs)
chr8 (12-174)||(24487277-24487439)
chr8 (229-298)||(15708054-15708123)
[»] chr1 (3 HSPs)
chr1 (386-505)||(2334929-2335048)
chr1 (229-303)||(2335131-2335205)
chr1 (68-117)||(13186321-13186370)
[»] scaffold0503 (2 HSPs)
scaffold0503 (12-174)||(1256-1431)
scaffold0503 (12-174)||(5823-5998)
[»] chr5 (14 HSPs)
chr5 (386-505)||(20371693-20371812)
chr5 (386-505)||(20397417-20397536)
chr5 (225-303)||(7254197-7254273)
chr5 (225-303)||(7261639-7261715)
chr5 (237-293)||(26552351-26552407)
chr5 (177-293)||(29885459-29885577)
chr5 (235-294)||(36370318-36370377)
chr5 (235-294)||(36994981-36995040)
chr5 (235-294)||(37008919-37008978)
chr5 (237-294)||(25449672-25449729)
chr5 (177-293)||(29902035-29902153)
chr5 (237-293)||(23576589-23576645)
chr5 (235-279)||(36384261-36384305)
chr5 (237-294)||(25676874-25676931)
[»] chr2 (7 HSPs)
chr2 (386-505)||(35039010-35039129)
chr2 (384-505)||(21069241-21069364)
chr2 (237-294)||(39650514-39650571)
chr2 (239-306)||(21069126-21069193)
chr2 (237-292)||(22935160-22935215)
chr2 (237-292)||(22941124-22941179)
chr2 (237-292)||(22955019-22955074)
[»] chr6 (6 HSPs)
chr6 (391-505)||(15390396-15390510)
chr6 (177-303)||(15665416-15665546)
chr6 (235-294)||(16324643-16324702)
chr6 (237-294)||(18964629-18964686)
chr6 (53-117)||(18437332-18437396)
chr6 (237-294)||(20531761-20531819)
[»] chr3 (15 HSPs)
chr3 (384-505)||(15910159-15910280)
chr3 (384-505)||(15924402-15924523)
chr3 (229-294)||(21608292-21608357)
chr3 (229-294)||(21616920-21616985)
chr3 (177-294)||(19834215-19834335)
chr3 (235-294)||(46372128-46372187)
chr3 (235-294)||(46386255-46386314)
chr3 (237-294)||(15528075-15528132)
chr3 (237-293)||(46392468-46392524)
chr3 (237-293)||(46400216-46400272)
chr3 (237-294)||(15536764-15536821)
chr3 (238-294)||(5650848-5650904)
chr3 (53-117)||(14252925-14252989)
chr3 (239-294)||(15924257-15924312)
chr3 (237-294)||(15609565-15609622)
[»] scaffold0484 (2 HSPs)
scaffold0484 (386-505)||(10483-10602)
scaffold0484 (177-306)||(10685-10816)
[»] scaffold0094 (2 HSPs)
scaffold0094 (384-505)||(29584-29705)
scaffold0094 (239-294)||(29795-29850)
[»] scaffold0014 (1 HSPs)
scaffold0014 (177-302)||(4557-4685)
[»] scaffold0077 (1 HSPs)
scaffold0077 (86-174)||(315-403)
[»] scaffold0755 (1 HSPs)
scaffold0755 (229-294)||(1794-1859)
[»] chr7 (12 HSPs)
chr7 (237-294)||(15684594-15684651)
chr7 (229-294)||(42630345-42630410)
chr7 (229-294)||(8810913-8810978)
chr7 (229-294)||(8818727-8818792)
chr7 (229-294)||(9461436-9461501)
chr7 (229-294)||(9475194-9475259)
chr7 (229-294)||(16387566-16387631)
chr7 (229-294)||(16401693-16401758)
chr7 (119-174)||(42017132-42017187)
chr7 (229-294)||(30364113-30364178)
chr7 (229-294)||(30378178-30378243)
chr7 (177-215)||(36899197-36899235)
[»] scaffold0067 (1 HSPs)
scaffold0067 (229-294)||(43672-43737)
[»] scaffold1575 (1 HSPs)
scaffold1575 (237-303)||(917-984)
[»] scaffold0815 (1 HSPs)
scaffold0815 (239-293)||(4215-4269)
[»] scaffold1271 (1 HSPs)
scaffold1271 (237-293)||(1019-1075)
[»] scaffold0269 (1 HSPs)
scaffold0269 (237-290)||(13731-13784)
[»] scaffold0182 (1 HSPs)
scaffold0182 (225-293)||(6156-6222)
[»] scaffold0435 (1 HSPs)
scaffold0435 (237-293)||(7563-7619)
[»] scaffold0034 (1 HSPs)
scaffold0034 (237-293)||(118645-118701)
[»] scaffold1855 (1 HSPs)
scaffold1855 (225-293)||(261-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (237-294)||(3809-3866)
[»] scaffold0101 (2 HSPs)
scaffold0101 (119-174)||(15923-15976)
scaffold0101 (258-294)||(15735-15771)
[»] scaffold1761 (1 HSPs)
scaffold1761 (238-293)||(574-629)
[»] scaffold0422 (1 HSPs)
scaffold0422 (241-293)||(5671-5723)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 15879578 - 15879416
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaac 111  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| ||||||  |||| |||||    
T  15879578 acagaggaaacacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagccgcacttccaaaccggacacatcacagagtcgtcaccaac 15879479  T
Q  112 cacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  15879478 cacaactacaacacattcgttgtcgtcacaaacaacagcaaacaaccgggttcatccaaaggt 15879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 15567129 - 15567000
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgccgccgcactggccg 273  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  15567129 agaatcgagtagaggagaaaagaacaagtagaaggaaccgaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggtgccgccacactggccg 15567030  T
Q  274 gccaactgccgccggaaccccatcctttcc 303  Q
    |||||||||||||| |||||||||||||||    
T  15567029 gccaactgccgccgaaaccccatcctttcc 15567000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 15579774 - 15579645
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgccgccgcactggccg 273  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  15579774 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaatcaaaaaaataagttgttagggttccggcgcgatggtgccgccgcactggccg 15579675  T
Q  274 gccaactgccgccggaaccccatcctttcc 303  Q
     |||||||||||||||||||||||||||||    
T  15579674 accaactgccgccggaaccccatcctttcc 15579645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 18216542 - 18216597
Alignment:
Q  238 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||    
T  18216542 tagggttccggcacggtggtgtcgccgcaccggccgaccaaccgccgccggaaccc 18216597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 1469 - 1626
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaac 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||  |||||||||||||||||  |||||| |||||||||||| |||||    
T  1469 acagaggaaacacaa-aagccagaatcgcacatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaac 1567  T
Q  112 cacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 170  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  1568 cacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 1760 - 1812
Alignment:
Q  241 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||||||||||||    
T  1760 ggttccggcgtggtgc-gccgccgtaccggccggccaactgccgccggaacccc 1812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 99773 - 99930
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaac 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||  |||||||||||||||||  |||||| |||||||||||| |||||    
T  99773 acagaggaaacacaa-aagccagaatcgcacatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaac 99871  T
Q  112 cacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 170  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  99872 cacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 99930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 21049 - 21116
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21049 aaatataagtt--tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 34790 - 34857
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  34790 aaatataagtt--tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 34857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 100064 - 100116
Alignment:
Q  241 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||||||||||||    
T  100064 ggttccggcgtggtgc-gccgccgtaccggccggccaactgccgccggaacccc 100116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 24487439 - 24487277
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaac 111  Q
    |||||||||||||||||| ||| ||||||||||| ||||| |||||||| ||||| |||| |||| |||||||  |||||| |||||||||||| |||||    
T  24487439 acagaggaaacacaagaatccagaatcgcacatccctaaggaacaacatcaactcgaagctgcacctccaaaccagacacatcacagaaccgtcaccaac 24487340  T
Q  112 cacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    |||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  24487339 cacaaccacaacacatccgttgccgtcacaaacaacaacaaacaaccgggttcatccaaaggt 24487277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 15708054 - 15708123
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcc 298  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  15708054 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaaccccatcc 15708123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 2335048 - 2334929
Alignment:
Q  386 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 485  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2335048 tgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcc 2334949  T
Q  486 tgtggtctgtgctgctcctc 505  Q
    |||||||| |||||||||||    
T  2334948 tgtggtctatgctgctcctc 2334929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 2335205 - 2335131
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 303  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  2335205 ataagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttcc 2335131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 13186321 - 13186370
Alignment:
Q  68 aagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 117  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  13186321 aagccgcacttccaaaccggacacatcacagaaccgtcaccaaccacaac 13186370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 1431 - 1256
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggac-------------acaccacag 98  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||             ||| |||||    
T  1431 acagaagaaacacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagctgcacttccaaaccggacttccaaaccggacacatcacag 1332  T
Q  99 aaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  1331 aaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 5998 - 5823
Alignment:
Q  12 acagaggaaacacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggac-------------acaccacag 98  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||             ||| |||||    
T  5998 acagaagaaacacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagctgcacttccaaaccggacttccaaaccggacacatcacag 5899  T
Q  99 aaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5898 aaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 5823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 20371812 - 20371693
Alignment:
Q  386 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 485  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20371812 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20371713  T
Q  486 tgtggtctgtgctgctcctc 505  Q
    |||||||| || ||||||||    
T  20371712 tgtggtctatgttgctcctc 20371693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 20397536 - 20397417
Alignment:
Q  386 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 485  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20397536 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20397437  T
Q  486 tgtggtctgtgctgctcctc 505  Q
    |||||||| || ||||||||    
T  20397436 tgtggtctatgttgctcctc 20397417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 7254273 - 7254197
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 303  Q
    |||||||||||  |||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7254273 aaatataagtt--tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttcc 7254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 7261715 - 7261639
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttcc 303  Q
    |||||||||||  |||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7261715 aaatataagtt--tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttcc 7261639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 26552407 - 26552351
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26552407 ttagggttccggcgcggtggtgccgccgcaccggccggccaaccgccgccggaaccc 26552351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 29885459 - 29885577
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata--taagttgttagggttccggcgcggtggtgccgccgcactggccgg 274  Q
    ||||||||||||||||||| |||||||||||||||||||         ||| |  ||||||||||||||||||||||||||| |||||| ||| ||| ||    
T  29885459 agaatcgagtagaggagaagagaacaagtagaaggaaccaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggcgccgccccacaggctgg 29885558  T
Q  275 ccaactgccgccggaaccc 293  Q
    ||||| ||| |||||||||    
T  29885559 ccaaccgccaccggaaccc 29885577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 36370377 - 36370318
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  36370377 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 36370318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 36995040 - 36994981
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  36995040 tgttagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 36994981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 37008978 - 37008919
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  37008978 tgttagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 37008919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 25449729 - 25449672
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  25449729 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 25449672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 29902035 - 29902153
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaacc--nnnnnnnntaaatataagttgttagggttccggcgcggtggtgccgccgcactggccgg 274  Q
    ||||||||||||||||||| |||||||||||||||||||           ||| |||||||||||||||||||||||||||| |||||| |||  ||  |    
T  29902035 agaatcgagtagaggagaagagaacaagtagaaggaaccaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggcgccgccccacaagctag 29902134  T
Q  275 ccaactgccgccggaaccc 293  Q
    ||||| ||| |||||||||    
T  29902135 ccaaccgccaccggaaccc 29902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 23576645 - 23576589
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||||||||||||||||| || || |||||||| || ||||||||||    
T  23576645 ttagggttccggcgcggtggtgccgccgtaccggtcggccaaccgctgccggaaccc 23576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 36384305 - 36384261
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaac 279  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  36384305 tgttagggttccggcgcggtggcgccgccgaactggccgtccaac 36384261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 25676931 - 25676874
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||||||| |||||||||| || ||||||||| | | | ||||||||||    
T  25676931 ttagggttccggcgcggaggtgccgccgtaccggccggccagccgtcaccggaacccc 25676874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 386 - 505
Target Start/End: Original strand, 35039010 - 35039129
Alignment:
Q  386 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 485  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  35039010 tgtgaactacagcctatatataggcctctttgatctcatacgcgtgggtgtacggccttaccatgcacccacgcacccttgttctttgaatctttgatcc 35039109  T
Q  486 tgtggtctgtgctgctcctc 505  Q
    |||||||| || ||||||||    
T  35039110 tgtggtctatgttgctcctc 35039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 21069241 - 21069364
Alignment:
Q  384 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgatt--ctttg 481  Q
    ||||||||||||||||||||||||| |||| |||||||||| || || | |||||| ||||||||||||||||||||||||||||||||||||   ||||    
T  21069241 tctgtgaactacagcctatatataggcctctttgatcccatgcgtgtaggtgtacgaccttaccatgcacccacgcacccttgtcctttgatttgttttg 21069340  T
Q  482 atcctgtggtctgtgctgctcctc 505  Q
    |||||||||||| || ||||||||    
T  21069341 atcctgtggtctatgttgctcctc 21069364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 39650514 - 39650571
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  39650514 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 39650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 21069126 - 21069193
Alignment:
Q  239 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccccatcctttccatc 306  Q
    |||||||||||||||||| ||||||| || |  |||||||| |||||||||||||||||| |||||||    
T  21069126 agggttccggcgcggtggcgccgccgtaccgatcggccaaccgccgccggaaccccatcccttccatc 21069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 22935160 - 22935215
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 292  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22935160 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 22941124 - 22941179
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 292  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22941124 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22941179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 22955019 - 22955074
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacc 292  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  22955019 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacc 22955074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 391 - 505
Target Start/End: Complemental strand, 15390510 - 15390396
Alignment:
Q  391 actacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcctgtgg 490  Q
    |||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||     
T  15390510 actacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcctgtga 15390411  T
Q  491 tctgtgctgctcctc 505  Q
    ||| || ||||||||    
T  15390410 tctatgttgctcctc 15390396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 15665546 - 15665416
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnta----aatataagttgttagggttccggcgcggtggtgccgccgcactggcc 272  Q
    |||||||||||||||||||||||||||||||||||||||         |    || |||||||||||||| |||||||||||||||||||||| ||||||    
T  15665546 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaaaatcaaaaaataagttgttagggctccggcgcggtggtgccgccgcgctggcc 15665447  T
Q  273 ggccaactgccgccggaaccccatcctttcc 303  Q
    |||||||||||||||||||||||||||||||    
T  15665446 ggccaactgccgccggaaccccatcctttcc 15665416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 16324702 - 16324643
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16324702 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16324643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 18964686 - 18964629
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  18964686 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 18964629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 18437332 - 18437396
Alignment:
Q  53 aacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 117  Q
    |||||||| ||||| ||||||||| ||||||| ||||||| |||| ||||||| |||||||||||    
T  18437332 aacaacatcaactcgaagccgcacgtccaaaccggacacatcacataaccgtcaccaaccacaac 18437396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 20531819 - 20531761
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactgg-ccggccaactgccgccggaacccc 294  Q
    ||||||||||||||||| ||||||| ||||| || |||||||||  |||||||||||||    
T  20531819 ttagggttccggcgcggaggtgccgtcgcaccggcccggccaaccaccgccggaacccc 20531761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 15910159 - 15910280
Alignment:
Q  384 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 483  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||||| ||||||||||| |||||||||| |||||||    
T  15910159 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatgcatccacgcaccctggtcctttgatcctttgat 15910258  T
Q  484 cctgtggtctgtgctgctcctc 505  Q
    |||||||||| || ||||||||    
T  15910259 cctgtggtctatgttgctcctc 15910280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 15924402 - 15924523
Alignment:
Q  384 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 483  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  15924402 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 15924501  T
Q  484 cctgtggtctgtgctgctcctc 505  Q
    |||||||||| || ||||||||    
T  15924502 cctgtggtctatgttgctcctc 15924523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 21608292 - 21608357
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21608292 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21608357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 21616920 - 21616985
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  21616920 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 21616985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 19834215 - 19834335
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata---taagttgttagggttccggcgcggtggtgccgccgcactggccg 273  Q
    |||||||||||||||||||||||||||||||||||||||         ||| |   |||||||||||||||||||| |||||| |||||| ||| |||||    
T  19834215 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaccaaaaaaaataagttgttagggttccggcacggtggcgccgcctcaccggccg 19834314  T
Q  274 gccaactgccgccggaacccc 294  Q
    |||| | ||||||||||||||    
T  19834315 gccagccgccgccggaacccc 19834335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 46372128 - 46372187
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  46372128 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46372187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 46386255 - 46386314
Alignment:
Q  235 tgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  46386255 tgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46386314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 15528132 - 15528075
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||    
T  15528132 ttagggttccggcacggtggcgccgccgcaccggctggccaactgccgccggaacccc 15528075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 46392524 - 46392468
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||    
T  46392524 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46392468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 46400272 - 46400216
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||    
T  46400272 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46400216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 15536821 - 15536764
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||| ||||||||||||||    
T  15536821 ttagggttccggcacggtggcgccgccgcaccggctggccaaccgccgccggaacccc 15536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 5650904 - 5650848
Alignment:
Q  238 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||||||| | |||||||||| ||||||||| | ||||||||||||||    
T  5650904 tagggttccggcgcggtagcgccgccgcaccggccggccagccgccgccggaacccc 5650848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 14252925 - 14252989
Alignment:
Q  53 aacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 117  Q
    |||||||| ||||| || |||||||||||||| ||||||| |||||||| ||| |||||||||||    
T  14252925 aacaacatcaactcgaatccgcacttccaaaccggacacatcacagaactgtcaccaaccacaac 14252989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 15924257 - 15924312
Alignment:
Q  239 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||| |||||| |||||||||| ||||||||| | ||||||||||||||    
T  15924257 agggttccggcacggtggcgccgccgcaccggccggccagccgccgccggaacccc 15924312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 15609622 - 15609565
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||| |||||| |||||||||| ||||||||| | ||| ||||||||||    
T  15609622 ttagggttccggcacggtggcgccgccgcaccggccggccagccgccaccggaacccc 15609565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 10602 - 10483
Alignment:
Q  386 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 485  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||     
T  10602 tgtgaactacaacctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccatgcacccttgtcctttgaatctttgatct 10503  T
Q  486 tgtggtctgtgctgctcctc 505  Q
    |||||||| || ||||||||    
T  10502 tgtggtctatgttgctcctc 10483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 10816 - 10685
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt--aaatataagttgttagggttccggcgcggtggtgccgccgcactggccgg 274  Q
    ||||||||||| ||||| ||||||||||||||| |||||        |  ||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  10816 agaatcgagtataggaggaaagaacaagtagaaagaaccaaaaaaatttaaaaaataagttgttagggttccggcgcggtggtgccgccgcactggcagg 10717  T
Q  275 ccaactgccgccggaaccccatcctttccatc 306  Q
    ||||| ||||||||||||||||||||||||||    
T  10716 ccaaccgccgccggaaccccatcctttccatc 10685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 384 - 505
Target Start/End: Complemental strand, 29705 - 29584
Alignment:
Q  384 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 483  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  29705 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 29606  T
Q  484 cctgtggtctgtgctgctcctc 505  Q
    |||||||||| || ||||||||    
T  29605 cctgtggtctatgttgctcctc 29584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 29850 - 29795
Alignment:
Q  239 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||| ||| || |||||||||| ||||||||| | ||||||||||||||    
T  29850 agggttccggcacggcggcgccgccgcaccggccggccagccgccgccggaacccc 29795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 4557 - 4685
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnntaaata---taagttgttagggttccggcgcggtggtgccgccgcactggccg 273  Q
    |||||||||||||||||||||||||||||||||||||||         ||| |   ||||||||||||| |||||||||||||||||||||| |||||||    
T  4557 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaaaaaaaaaaataagttgttagggctccggcgcggtggtgccgccgcgctggccg 4656  T
Q  274 gccaactgccgccggaaccccatcctttc 302  Q
    |||||||||||||||||||||||||||||    
T  4657 gccaactgccgccggaaccccatcctttc 4685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 315 - 403
Alignment:
Q  86 ggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  315 ggacacatcacagagccgtcaccaaccacaactacaacacatctgttgccgtcacaaacaacagcaaacaaccaagttcatccaaaggt 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 1794 - 1859
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  1794 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 1859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 15684594 - 15684651
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15684594 ttagggttccggcgcggtggtgccgccgcactggccggccaaccgccgccggaacccc 15684651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 42630410 - 42630345
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  42630410 ataagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 42630345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 8810913 - 8810978
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  8810913 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 8810978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 8818727 - 8818792
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  8818727 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 8818792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 9461436 - 9461501
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  9461436 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9461501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 9475194 - 9475259
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  9475194 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9475259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 16387631 - 16387566
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16387631 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16387566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 16401758 - 16401693
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  16401758 ataagctgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16401693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 42017187 - 42017132
Alignment:
Q  119 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  42017187 acaacacatctgttgccgtcacaaacaacagcaagcaaccgggttcatccaaaggt 42017132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 30364178 - 30364113
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||    
T  30364178 ataagctgttagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 30378243 - 30378178
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||    
T  30378243 ataagctgttagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 36899197 - 36899235
Alignment:
Q  177 agaatcgagtagaggagaaaagaacaagtagaaggaacc 215  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  36899197 agaatcgagtagaggagaagagaacaagtagaaagaacc 36899235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 43737 - 43672
Alignment:
Q  229 ataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43737 ataaattgatagggttccgacgcggtggtgccgccgcaccggccggccaaccgccgccggaacccc 43672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 917 - 984
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaa-ccccatcctttcc 303  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  ||||||||| |||||||||||||    
T  917 ttagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccccatcctttcc 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 4269 - 4215
Alignment:
Q  239 agggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  4269 agggttccggcgcggtggcgccgccgcaccggccggccaaccgccgccggaaccc 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 1075 - 1019
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    ||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||    
T  1075 ttagggttccggcacggtggtgccgccgcaccggccggccaacctccgccggaaccc 1019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 13784 - 13731
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaa 290  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||    
T  13784 ttagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaa 13731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 6156 - 6222
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||  |||||||| ||| |||||| |||||||||| ||||||||||| |||||||||||||    
T  6156 aaatataagtt--tagggttctggcacggtggcgccgccgcaccggccggccaaccgccgccggaaccc 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 7619 - 7563
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||| ||||||||||||| || || |||||||| |||||||||||||    
T  7619 ttagggttccggcgtggtggtgccgccgtaccggtcggccaaccgccgccggaaccc 7563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 118701 - 118645
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||| | ||||||    
T  118701 ttagggttccggcgcggtggtgccgccgtaccggccggccaaccgccgtcagaaccc 118645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1855 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 261 - 327
Alignment:
Q  225 aaatataagttgttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||||  || ||||||||| |||||| |||||||||| ||||||||||| | |||||||||||    
T  261 aaatataagtt--taaggttccggcacggtggcgccgccgcaccggccggccaaccgtcgccggaaccc 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 3866 - 3809
Alignment:
Q  237 ttagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaacccc 294  Q
    ||||||||||||||||| |||||||||| || ||||||||| | ||| ||||||||||    
T  3866 ttagggttccggcgcggaggtgccgccgtaccggccggccagccgccaccggaacccc 3809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 15976 - 15923
Alignment:
Q  119 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 174  Q
    |||||||||| || |||||| ||||||||||||  |||||||||||||||||||||    
T  15976 acaacacatccgtggccgtcacaaacaacagca--caaccgggttcatccaaaggt 15923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 15771 - 15735
Alignment:
Q  258 gccgccgcactggccggccaactgccgccggaacccc 294  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  15771 gccgccgcaccggccggccaaccgccgccggaacccc 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1761 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 629 - 574
Alignment:
Q  238 tagggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    |||||||||| |||||||| |||||||||| || ||||||||  ||||||||||||    
T  629 tagggttccgacgcggtggcgccgccgcaccggtcggccaaccaccgccggaaccc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 5723 - 5671
Alignment:
Q  241 ggttccggcgcggtggtgccgccgcactggccggccaactgccgccggaaccc 293  Q
    ||||||| ||||| |||||||| |||| ||||||||||| |||||| ||||||    
T  5723 ggttccgacgcggcggtgccgctgcaccggccggccaaccgccgccagaaccc 5671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University