View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11492_high_1 (Length: 362)
Name: NF11492_high_1
Description: NF11492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11492_high_1 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 7143361 - 7143709
Alignment:
| Q |
14 |
aattgtacctccactgaatggagatatggtgcaagaacatatacaattgcagtttagaacaaagaactatgagtacttttacgacggtaaaatcctagag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7143361 |
aattgtacctccactgaatggagatatggtgcaagaacatctacaattgcagtttagaacaaagaactatgagtacttttacgacgctaaaatcctagag |
7143460 |
T |
|
| Q |
114 |
atgatgactggattggatttatcatgcaatatcgtaactggagtcataccttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
7143461 |
atgatgactggattggatttatcatgcaatatcgtaactagagtcataccttctgaacttggagacatgcaaaaccatcgagtcttgaatctataacata |
7143560 |
T |
|
| Q |
214 |
atcacttgtcaggtcctattccaatcactttttccaatcttacccaaatagagagtcttgacttatcataaagtaacttgaatggtaaggtaccttctca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
7143561 |
atcacttgtcaggtcctattccaatcactttttccaatcttacccaaatagagagtcttgacttatcatagagtaacttgaatggtaaggtagcttctca |
7143660 |
T |
|
| Q |
314 |
actaagtcacttgacctttatggatatcttcaatgtgtcttacaacaac |
362 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7143661 |
actaagtcacttgacctttatagatatcttcaatgtgtcttacaacaac |
7143709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 64 - 362
Target Start/End: Complemental strand, 4841316 - 4841018
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
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|||||||||||||| || |||| ||||||||| | |||||| | |||||||| |||||||||||||||||||||||||||| |||| || || || || |
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| T |
4841316 |
agtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataatttaacaggtgttatccc |
4841217 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
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||| || |||||||| | ||| | || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4841216 |
ttcccaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttcaaatcttacccaaata |
4841117 |
T |
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| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtaccttctcaactaagtcacttgacctttatggatatcttcaatgtgtcttacaacaac |
362 |
Q |
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|||||||||||||||||||| | |||||||| ||||||| |||| | |||||| || |||| |||| | || |||||||||||||| ||||||||| |
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| T |
4841116 |
gagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttagaaatcttcaatgtgtcatacaacaac |
4841018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 64 - 307
Target Start/End: Original strand, 5196947 - 5197190
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
| |
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|||| ||||||||| ||||||| ||||||||| | |||||| | ||||||| |||||||||||||||||||||||||||| |||| || ||||| || |
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| T |
5196947 |
agttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatgcaataagctaacaggtgtcatccc |
5197046 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
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|||| || |||||||| | ||| | || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
5197047 |
ttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttcaaatcttacccaaata |
5197146 |
T |
|
| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtacc |
307 |
Q |
| |
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|||||||||||||||||||| | | |||||| ||||||| |||| |
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| T |
5197147 |
gagagtcttgacttatcatacaatgacttgagtggtaagatacc |
5197190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 61 - 362
Target Start/End: Original strand, 5183545 - 5183846
Alignment:
| Q |
61 |
tgcagtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcat |
160 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| | |||| | | ||| |||| |||||||||||||||||||||||||||| |||| || ||||| |
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|
| T |
5183545 |
tgcagtttagaacaaagcactatgattacttttacaagggtatagttctaaagatcatgactggattggatttatcatgcaataagctaacaggtgtcat |
5183644 |
T |
|
| Q |
161 |
accttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaa |
260 |
Q |
| |
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|||||| || |||||||| | ||| | || || ||||||||||||||||||| ||||||| |||||||||||||| |||||||| || ||||||||| |
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| T |
5183645 |
cccttctcaaattggagacctacaacaaattaaagccttgaatctatcacataattacttgtctggtcctattccaataactttttcaaaacttacccaa |
5183744 |
T |
|
| Q |
261 |
atagagagtcttgacttatcataaagtaacttgaatggtaaggtaccttctcaactaagtcacttgacctttatggatatcttcaatgtgtcttacaaca |
360 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| ||||||| | |||| | |||||| | ||||||| | | || |||||||||||||| ||||||| |
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| T |
5183745 |
atagagagccttgacttatcatacaataacttgagtggtaagattccttatgaactaaccaagttgacctctttagaaatcttcaatgtgtcatacaaca |
5183844 |
T |
|
| Q |
361 |
ac |
362 |
Q |
| |
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|| |
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| T |
5183845 |
ac |
5183846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 64 - 307
Target Start/End: Original strand, 5174206 - 5174449
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
| |
|
|||| ||||||||| || |||| |||| |||| | |||| | | ||||||| |||||||||||||||||||||||||||| |||| || ||||| || |
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| T |
5174206 |
agttcagaacaaagcacaatgaatactcttacaagggtatagttctagagaatatgactggattggatttatcatgcaataagctaacaggtgtcatccc |
5174305 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
| |
|
|||| || |||||||| | ||| | || ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
5174306 |
ttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtctggtcccattccaatcactttttcaaatcttacccaaata |
5174405 |
T |
|
| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtacc |
307 |
Q |
| |
|
|||||||||||||||||||| | | |||||| ||||||| |||| |
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|
| T |
5174406 |
gagagtcttgacttatcatacaatgacttgagtggtaagatacc |
5174449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 64 - 362
Target Start/End: Complemental strand, 4855822 - 4855524
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||| | |||||| | ||||||| ||||||||||||||||||||||| |||| | |||| || ||||| || |
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| T |
4855822 |
agttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataacctaacaggtgtcatccc |
4855723 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
| |
|
|||| || |||| || | ||| || ||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
4855722 |
ttctcaaattggtcaccttcaaccagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaata |
4855623 |
T |
|
| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtaccttctcaactaagtcacttgacctttatggatatcttcaatgtgtcttacaacaac |
362 |
Q |
| |
|
|| || |||||||||||||| | |||||||| ||||||| |||||| | |||||| | ||||||| | | || || ||||||||||| ||||||||| |
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| T |
4855622 |
gaaagccttgacttatcatacaataacttgagtggtaagataccttatgaactaaccaagttgacctctttagaaatattcaatgtgtcatacaacaac |
4855524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 307
Target Start/End: Original strand, 5215092 - 5215335
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||| | |||||| | ||||||| ||||||||||||||||||||||| |||| | |||| || |||| || |
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|
| T |
5215092 |
agttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataacctaacaggtctcatccc |
5215191 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
| |
|
|||| || |||| || | ||| | || ||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
5215192 |
ttctcaaattggtcaccttcaacaagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaata |
5215291 |
T |
|
| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtacc |
307 |
Q |
| |
|
||||| |||||||||||||| | |||||||| ||||||| |||| |
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|
| T |
5215292 |
gagagccttgacttatcatacaataacttgagtggtaagatacc |
5215335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 309
Target Start/End: Original strand, 5161265 - 5161510
Alignment:
| Q |
64 |
agtttagaacaaagaactatgagtacttttacgacggtaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactggagtcatacc |
163 |
Q |
| |
|
|||| ||||||||| || |||| ||||||||| | |||||| ||||||||| |||||||||||||||||||||||||| | |||| || || || |
|
|
| T |
5161265 |
agttcagaacaaagcacaatgattacttttacaaaggtaaagtcctagagaaaatgactggattggatttatcatgcaacaagctaacaggtactatccc |
5161364 |
T |
|
| Q |
164 |
ttctgaacttggagacatgcaaaactttcgagtcttgaatctatcacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
263 |
Q |
| |
|
|||| || |||| || ||||| | || || |||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||||| ||||| |
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|
| T |
5161365 |
ttctcaaattgggcacctgcaacaagttttagccttgaacctatcacataatcacttgtcgggtcctattccaattacgttttcaaatcttaccgaaata |
5161464 |
T |
|
| Q |
264 |
gagagtcttgacttatcataaagtaacttgaatggtaaggtacctt |
309 |
Q |
| |
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||||| |||||||||||||| | |||||||| ||||||| |||||| |
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| T |
5161465 |
gagagccttgacttatcatacaataacttgagtggtaagatacctt |
5161510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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