View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_high_13 (Length: 328)
Name: NF11493_high_13
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 40405360 - 40405660
Alignment:
| Q |
19 |
taccaaacacacttggatttgtgttcggcataattcagatggtggtgtatttgatatatagaaatgctacaccagtggtagaggcaccaatgaagggtca |
118 |
Q |
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| T |
40405360 |
taccaaacacacttggatttgtgttcggcataattcagatggtggtgtatttgatatatagaaatgctacaccagtggtagaggcaccaatgaagggtca |
40405459 |
T |
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| Q |
119 |
agagttgagtggtggtcatataattgatgttgtgaagattggaaccgattccaatcgtgcaggtggaggtgctggtagcaaagtctgattttaacatggg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40405460 |
agagttgagtggtggtcatataattgatgttgtgaagattggaacagatcccaatcgtgcaggtggaggtgccggtagcaaagtctgattttaacatggg |
40405559 |
T |
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| Q |
219 |
atccatgaccgggnnnnnnnnnnnnnnnnnnnnnnnnntcttaacctaaactttcaatttcatataatattgtaaaatgcaagaagggtgcttagtctct |
318 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40405560 |
atccatgaccgggaaaataaaaattgaaaaagaaaaaatcttaacctaaactatcaatttcatataatattgtaaaatgcaagaagggtgcttagtctct |
40405659 |
T |
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| Q |
319 |
g |
319 |
Q |
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| T |
40405660 |
g |
40405660 |
T |
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