View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11493_high_18 (Length: 264)

Name: NF11493_high_18
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11493_high_18
NF11493_high_18
[»] chr2 (7 HSPs)
chr2 (1-111)||(14283896-14284006)
chr2 (132-221)||(28527048-28527137)
chr2 (132-221)||(45464149-45464238)
chr2 (169-209)||(14284021-14284061)
chr2 (216-247)||(14284670-14284701)
chr2 (153-221)||(15859300-15859368)
chr2 (131-207)||(31545951-31546027)
[»] chr5 (10 HSPs)
chr5 (138-207)||(858433-858502)
chr5 (131-197)||(15814750-15814816)
chr5 (131-209)||(16283521-16283599)
chr5 (131-221)||(17242888-17242978)
chr5 (131-221)||(33012438-33012528)
chr5 (131-197)||(36446622-36446687)
chr5 (139-221)||(42211413-42211495)
chr5 (132-221)||(35334461-35334550)
chr5 (144-197)||(41594794-41594847)
chr5 (131-207)||(33988298-33988374)
[»] chr3 (14 HSPs)
chr3 (131-221)||(36097588-36097678)
chr3 (131-207)||(2868672-2868748)
chr3 (146-221)||(39364985-39365061)
chr3 (132-207)||(53876370-53876445)
chr3 (131-197)||(14756047-14756113)
chr3 (131-209)||(46785912-46785990)
chr3 (143-221)||(11529021-11529102)
chr3 (131-206)||(17776927-17777002)
chr3 (131-206)||(19078228-19078303)
chr3 (143-206)||(26143000-26143063)
chr3 (153-207)||(43639471-43639525)
chr3 (166-207)||(1772074-1772115)
chr3 (131-207)||(15280702-15280778)
chr3 (143-207)||(49408607-49408671)
[»] chr7 (3 HSPs)
chr7 (131-197)||(23186083-23186149)
chr7 (131-197)||(46095354-46095420)
chr7 (132-209)||(45890792-45890869)
[»] chr4 (12 HSPs)
chr4 (131-207)||(38160085-38160161)
chr4 (139-207)||(17237141-17237209)
chr4 (131-207)||(30568761-30568837)
chr4 (159-221)||(26185266-26185328)
chr4 (132-192)||(4357680-4357740)
chr4 (139-207)||(28974404-28974472)
chr4 (131-191)||(45290150-45290210)
chr4 (152-207)||(16493252-16493307)
chr4 (131-197)||(39258203-39258269)
chr4 (131-192)||(39976327-39976388)
chr4 (159-223)||(41371253-41371317)
chr4 (132-180)||(50714707-50714755)
[»] chr8 (4 HSPs)
chr8 (132-207)||(40316523-40316598)
chr8 (169-207)||(29730867-29730905)
chr8 (131-192)||(21587386-21587447)
chr8 (169-221)||(39171627-39171679)
[»] chr1 (5 HSPs)
chr1 (131-221)||(49945016-49945106)
chr1 (152-212)||(47479919-47479979)
chr1 (131-186)||(30750443-30750498)
chr1 (131-186)||(30752254-30752309)
chr1 (133-207)||(16040175-16040249)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14283896 - 14284006
Alignment:
Q  1 aaacaaaatataataattttaaatgacaactatactccacgcaaatttgtccacgcttggcacgagtctcatgatgtctttaaaaatgcttttcattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14283896 aaacaaaatataataattttaaatgacaactatactccacgcaaatttgtccacgcttggcacgagtctcatgatgtctttaaaaatgcttttcataatt 14283995  T
Q  101 tttactccctc 111  Q
    |||||||||||    
T  14283996 tttactccctc 14284006  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 28527137 - 28527048
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    ||||| ||||||||||||| |||||| |||||| ||||||||| ||||||| ||||||| |||||| ||||||||| | ||||| |||||    
T  28527137 attaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgctcttgttaag 28527048  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 45464149 - 45464238
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    ||||| ||||||||||||| |||||| |||||| ||||||||| ||||| | || ||||||||||| || |||||||| ||||| |||||    
T  45464149 attaagtgagtcatttgctcatttcacacatattaagaaaaatgtataagtgaatgagagaaaaaaatgattttaaatgctcttgttaag 45464238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 14284021 - 14284061
Alignment:
Q  169 aaaaatatataaataaaggagagaaaaaagtggttttaaat 209  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  14284021 aaaaatgtataaataaaggagagaaaaaaatggttttaaat 14284061  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 247
Target Start/End: Original strand, 14284670 - 14284701
Alignment:
Q  216 tttaagaacaactttatttagatggaatttat 247  Q
    ||||||||||||||||||||||||||||||||    
T  14284670 tttaagaacaactttatttagatggaatttat 14284701  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 15859300 - 15859368
Alignment:
Q  153 tttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    ||||| |||||| |||| |||||||||||| ||||||||| |||| | ||||||| |||| || |||||    
T  15859300 tttcacacatattaagacaaatatataaatgaaggagagagaaaaatagttttaagtacttttgttaag 15859368  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 31545951 - 31546027
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| ||| ||||||||| |||||| | |||| || |||||| ||||||| |||||||   ||||||||||||||    
T  31545951 gattaagtgaatcatttgctcatttcacatatattaaaaaaaatgtataaatgaaggagaaggaaaagtggttttaa 31546027  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 858502 - 858433
Alignment:
Q  138 tgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    ||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  858502 tgagtcatttgctcatttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggttttaa 858433  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 15814816 - 15814750
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| |||||||||||||||||||| | |||| || |||||| ||||||| ||||||||| ||||    
T  15814816 gattaactgagtcatttgcttatttcacatatattaaaaaaaatgtataaatgaaggagagagaaaa 15814750  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 16283521 - 16283599
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaat 209  Q
    |||||| ||||| ||||| | |||||| |  ||| || |||||| ||||||| |||||||||||||| |||||||||||    
T  16283521 gattaactgagttatttgatcatttcacatgtattaaaaaaaatgtataaatgaaggagagaaaaaaatggttttaaat 16283599  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 17242888 - 17242978
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||| ||||||||||||| |  ||| |||||| |||| |||| ||||||| || |||||| |||| ||||||| | ||||||| |||||    
T  17242888 gattaagtgagtcatttgctcaaatcacacatattaagacaaatgtataaatgaatgagagagaaaaatggtttttagtactcttgttaag 17242978  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 33012528 - 33012438
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||| ||||||||||||| ||||||||||||| || ||  |  ||||||| ||| ||||| |||| ||||||||| | ||||| |||||    
T  33012528 gattaactgagtcatttgctcatttcatacatattaataaggacgtataaatgaagaagagataaaaatggttttaagtgctcttgttaag 33012438  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 36446622 - 36446687
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| ||||||||||||| | |||| |||||| ||||||||| ||||||| ||||||| ||||||    
T  36446622 gattaactgagtcatttgctca-ttcacacatattaagaaaaatgtataaatgaaggagataaaaaa 36446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 42211495 - 42211413
Alignment:
Q  139 gagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||||||||| |||||| |||||| || |||||| ||||||| |||| | || |||| ||||||||| | ||||| |||||    
T  42211495 gagtcatttgctcatttcacacatattaaaaaaaatgtataaatgaaggtgggagaaaaatggttttaagtgctcttgttaag 42211413  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 35334461 - 35334550
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    ||||| ||||||||||||| |  ||| | |||| |||| |||||||||||| ||||||||| |||| | ||||||| | ||||| |||||    
T  35334461 attaactgagtcatttgctcaaatcacagatattaagacaaatatataaatgaaggagagagaaaaatagttttaagtgctcttattaag 35334550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 41594794 - 41594847
Alignment:
Q  144 atttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    ||||||| ||||||||||||| ||||||||||||||| | || |||||| ||||    
T  41594794 atttgctcatttcatacatattaagaaaaatatataagtgaatgagagagaaaa 41594847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 33988374 - 33988298
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| ||||||||||||| |  ||| |||||| |||| |||| ||||||| ||||||| | |||| |||||||||    
T  33988374 gattaactgagtcatttgctcaaatcacacatattaagacaaatgtataaatgaaggagaaagaaaaatggttttaa 33988298  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 36097588 - 36097678
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||| ||||||||||||| ||||||||||||| ||||| ||  ||||||| ||||||||| |||| ||||||||| ||||||| |||||    
T  36097588 gattaactgagtcatttgctcatttcatacatattaagaagaacgtataaatgaaggagagagaaaaatggttttaagtactcttgttaag 36097678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 2868748 - 2868672
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||| ||||||| ||||||||| |||| |||||||||    
T  2868748 gattaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggttttaa 2868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 39364985 - 39365061
Alignment:
Q  146 ttgcttatttcatacatatgaagaaaaatatataaataaaggagaga-aaaaagtggttttaaatactctttttaag 221  Q
    ||||| |||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||| | ||||| |||||    
T  39364985 ttgctcatttcacacatattaagaaaaatgtataaataaaggagagagaaaaagtggttttaagtgctcttgttaag 39365061  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 53876370 - 53876445
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    ||||| ||||||||||| |||||||||| |||| ||||||||| ||||||| |||||| ||||||| || ||||||    
T  53876370 attaactgagtcatttgtttatttcatagatattaagaaaaatgtataaatgaaggagtgaaaaaaatgattttaa 53876445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 14756047 - 14756113
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| ||||||||||||| |||| | |||||| ||||||||| ||||| ||||||||||| ||||    
T  14756047 gattaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaa 14756113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 46785912 - 46785990
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaat 209  Q
    |||||| |||||||||| || |||||| | |||| ||||||||| ||| | |||||||||||||||| | |||||||||    
T  46785912 gattaactgagtcatttactcatttcacatatattaagaaaaatgtattagtaaaggagagaaaaaaatagttttaaat 46785990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 11529021 - 11529102
Alignment:
Q  143 catttgcttatttcatacatatgaagaaaaatatataaataaaggagag---aaaaaagtggttttaaatactctttttaag 221  Q
    |||||||| |||||| |||||| ||||||||||||||||| || || ||   |||||| ||||||||||| ||||| |||||    
T  11529021 catttgctcatttcacacatattaagaaaaatatataaatgaaagaaagagaaaaaaaatggttttaaatgctcttgttaag 11529102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 17776927 - 17777002
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggtttta 206  Q
    |||||| ||||||||||||| |||||| || ||| || |||||| ||||||| || |||||| |||| ||||||||    
T  17776927 gattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttta 17777002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 19078228 - 19078303
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggtttta 206  Q
    |||||| ||||||||||||| |||||| || ||| || |||||| ||||||| || |||||| |||| ||||||||    
T  19078228 gattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttta 19078303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 26143063 - 26143000
Alignment:
Q  143 catttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggtttta 206  Q
    ||||| || |||||| |||||| |||| |||| ||||||||||||||||| |||| ||||||||    
T  26143063 cattttctcatttcacacatattaagacaaatgtataaataaaggagagagaaaattggtttta 26143000  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 43639471 - 43639525
Alignment:
Q  153 tttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    ||||| |||||| |||| |||||||||||| ||||||||| |||| |||||||||    
T  43639471 tttcacacatattaagacaaatatataaatgaaggagagagaaaaatggttttaa 43639525  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 1772074 - 1772115
Alignment:
Q  166 aagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    ||||||||| ||||||||||||||||| |||| |||||||||    
T  1772074 aagaaaaatgtataaataaaggagagagaaaaatggttttaa 1772115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 15280778 - 15280702
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| ||||||||||||| |  ||| |||||| |||| |||| ||||||| ||||||||| |||| || ||||||    
T  15280778 gattaactgagtcatttgctcaaatcacacatattaagataaatgtataaatgaaggagagataaaaatgattttaa 15280702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 49408671 - 49408607
Alignment:
Q  143 catttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||||| ||||||||||||| ||||| ||| ||||||| ||||| ||| |||| | |||||||    
T  49408671 catttgctcatttcatacatattaagaataatttataaatgaaggaaagagaaaaatagttttaa 49408607  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 23186083 - 23186149
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| ||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| ||||    
T  23186083 gattaactgagtcatttgctcatttcatatatattaagaaaaatatataaatgaaggagagagaaaa 23186149  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 46095354 - 46095420
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  46095354 gattaagtgagacatttgctaatttcatacatattaagaaaaatgtataaataaaggagaaaaaaaa 46095420  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 45890792 - 45890869
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaat 209  Q
    ||||| ||||| ||||| | |||||| || ||| ||||||||| ||||||  ||||||||| |||| |||||||||||    
T  45890792 attaactgagttatttgttcatttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggttttaaat 45890869  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 38160085 - 38160161
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| ||||||||||||| |||| ||| |||| ||||||||| ||||||||||||||||| |||| | |||||||    
T  38160085 gattaagtgagtcatttgctcattttatatatattaagaaaaatgtataaataaaggagagagaaaaattgttttaa 38160161  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 17237209 - 17237141
Alignment:
Q  139 gagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||||||||| |||||| || ||| ||||||||||||||||| ||||||||| |||| | |||||||    
T  17237209 gagtcatttgctcatttcacacctattaagaaaaatatataaatgaaggagagagaaaaatagttttaa 17237141  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 30568837 - 30568761
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| |||||||||| ||||||||||| |||| ||||||||| ||||||  ||||| ||| |||| |||||||||    
T  30568837 gattaagtgagtcatttacttatttcatatatattaagaaaaatgtataaaggaaggaaagagaaaaatggttttaa 30568761  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 26185328 - 26185266
Alignment:
Q  159 acatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||| |||| |||| ||||||| ||||||||| |||| ||||||||||||||||| |||||    
T  26185328 acatatcaagacaaatgtataaatgaaggagagagaaaaatggttttaaatactcttgttaag 26185266  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 4357740 - 4357680
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagaga 192  Q
    ||||| |||||||||  || |||||||| |||| ||||||||||||||||| |||||||||    
T  4357740 attaactgagtcattgactcatttcatatatattaagaaaaatatataaatgaaggagaga 4357680  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 28974472 - 28974404
Alignment:
Q  139 gagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||||||| |||||||| |||||| |||| |||| ||||||| || | |||| ||||||||||||||    
T  28974472 gagtcatttgtttatttcacacatattaagacaaatgtataaatgaaagggagataaaagtggttttaa 28974404  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 45290210 - 45290150
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagag 191  Q
    |||||| | ||||||||||| |||| | |||||| ||||||||| ||||||||||||||||    
T  45290210 gattaactaagtcatttgctcatttaacacatattaagaaaaatgtataaataaaggagag 45290150  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 16493252 - 16493307
Alignment:
Q  152 atttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||| |||||||||    
T  16493252 atttcacacatattaagataaatgtataaataaaagagagaaaaaaatggttttaa 16493307  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 39258203 - 39258269
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaa 197  Q
    |||||| |||||||||||||||||||| |||||| || |||||| ||||| | || |||||| ||||    
T  39258203 gattaattgagtcatttgcttatttcacacatattaaaaaaaatgtataagtgaatgagagagaaaa 39258269  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 39976327 - 39976388
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagaga 192  Q
    |||||| ||||||||||| | ||||||||||||| ||||| ||  ||||||| |||||||||    
T  39976327 gattaactgagtcatttgttcatttcatacatattaagaagaacgtataaatgaaggagaga 39976388  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 41371253 - 41371317
Alignment:
Q  159 acatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaagaa 223  Q
    |||||| |||| |||||||||||| |||||| ||||||| | ||||||| | ||||| |||||||    
T  41371253 acatattaagacaaatatataaatgaaggagtgaaaaaaatagttttaagtgctcttgttaagaa 41371317  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 50714755 - 50714707
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataa 180  Q
    ||||| ||||||||||| |||||||||| |||| ||||||||| |||||    
T  50714755 attaagtgagtcatttgtttatttcatatatattaagaaaaatttataa 50714707  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 40316523 - 40316598
Alignment:
Q  132 attaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| || |||| || ||||||||||| |||||||||    
T  40316523 attaaatgagtcatttgcttatttcactcatactaagaaaaatgtacaaatgaatgagagaaaaaaatggttttaa 40316598  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 29730867 - 29730905
Alignment:
Q  169 aaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  29730867 aaaaatatataaatgaaggagagagaaaagtggttttaa 29730905  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 21587447 - 21587386
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagaga 192  Q
    |||||| ||||||||||| | ||||||||||||| ||||| ||  ||||||| |||||||||    
T  21587447 gattaactgagtcatttgatcatttcatacatattaagaagaacgtataaatgaaggagaga 21587386  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 39171679 - 39171627
Alignment:
Q  169 aaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||||||||||| ||||||||| |||| ||||||||| |||| || |||||    
T  39171679 aaaaatatataaatgaaggagagagaaaaatggttttaagtacttttgttaag 39171627  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 49945106 - 49945016
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatactctttttaag 221  Q
    |||||| | ||||||||||| |||||| |||||| ||||||||| ||||||| ||| ||||| |||| ||||||||| | ||||| |||||    
T  49945106 gattaactaagtcatttgctcatttcacacatattaagaaaaatgtataaatgaagaagagagaaaaatggttttaagtgctcttgttaag 49945016  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 47479919 - 47479979
Alignment:
Q  152 atttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaaatact 212  Q
    ||||||||  ||| ||||||||||||| |||||| |||||| |||| ||||||||||||||    
T  47479919 atttcatatttattaagaaaaatatatcaataaacgagagagaaaaatggttttaaatact 47479979  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 30750498 - 30750443
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaag 186  Q
    |||||| |||||||||| || ||||||||| ||| ||||||||| |||||||||||    
T  30750498 gattaactgagtcatttactcatttcatacgtattaagaaaaatgtataaataaag 30750443  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 30752309 - 30752254
Alignment:
Q  131 gattaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaag 186  Q
    |||||| |||||||||| || ||||||||| ||| ||||||||| |||||||||||    
T  30752309 gattaactgagtcatttactcatttcatacgtattaagaaaaatgtataaataaag 30752254  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 16040249 - 16040175
Alignment:
Q  133 ttaaatgagtcatttgcttatttcatacatatgaagaaaaatatataaataaaggagagaaaaaagtggttttaa 207  Q
    |||| ||||||||||||| |||||| |  ||| ||||||||||||| | | ||||||||| |||| |||||||||    
T  16040249 ttaattgagtcatttgctcatttcacatttattaagaaaaatatattagtcaaggagagagaaaaatggttttaa 16040175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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