View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11493_high_5 (Length: 507)
Name: NF11493_high_5
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_high_5 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 493
Target Start/End: Original strand, 16987555 - 16988036
Alignment:
| Q |
21 |
gtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaagaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||| || |||| |||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16987555 |
gtgaccaaaactgatgcacctttcgttctatttt------gcaacacagacttgaacttattccatttctctcggtcttcagtccacacatcatcaagaa |
16987648 |
T |
|
| Q |
121 |
caagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggattttctac---------------gac |
205 |
Q |
| |
|
||||||||||| |||||||||| | |||||||| || || ||||||||||||||||||| |||||||| |||||||| | | || |
|
|
| T |
16987649 |
caagtaaataccttttgttttgtagaatttcttgaacatttttttgcattgactctaaagacgagagatgtggattttttccaatagtgttttcaatgat |
16987748 |
T |
|
| Q |
206 |
ggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttga |
305 |
Q |
| |
|
|||||||||||||||||| | ||||||||| | | |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
16987749 |
cgactctaaaactttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatttga |
16987848 |
T |
|
| Q |
306 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttct |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
16987849 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagagagtttttcactgtcactagcatgtcttagaagaaactctacaatctgtt |
16987948 |
T |
|
| Q |
406 |
ctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||| || |||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16987949 |
ctttatctttgtctcttccatatactttcggttctgtgatagtagaaatagtttggcgccattcatcatctcctcgttgatgctcctc |
16988036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 16658107 - 16658592
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || |||| | |||| | || |||||||||| |||| |||||||| |||| |||||||||| |
|
|
| T |
16658107 |
gtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaa |
16658200 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||| || ||| |||| | |||||||||||| | |||||| | | |||| ||| |
|
|
| T |
16658201 |
gaacaagcaaataccttttgttttgcaaaatatcttgaaccttttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctat |
16658300 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||| | | |||||||||||||||| |||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
16658301 |
gatggactctaaaattttcagtaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccatt |
16658400 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
||||| |||| ||||||||| | ||| || |||||||||||| |||||| |||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
16658401 |
tgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatct |
16658497 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtg |
497 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16658498 |
gctctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcgttgctgctcctctgtg |
16658592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 16837775 - 16838260
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | |||| | |||| |||| ||||||||| | || |||| ||| ||||||||||||||| |
|
|
| T |
16837775 |
gtagtgaccaaaattgatgcacctttc------tttccatttggcaacaaagacttgaacgtattccatttcacttggtcatcactccacacatcatcaa |
16837868 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt----------------cta |
201 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| || ||| ||| ||| |||||||||| | |||||| | |||||| ||| |
|
|
| T |
16837869 |
gaacaagcaaataccttttgttttgcaaaatttcttgaaccttttttcgcaaggactctaaagacaagagatctagatttttttccaatggtgttttcta |
16837968 |
T |
|
| Q |
202 |
cgacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgt |
301 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||| | | |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
16837969 |
tgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccac |
16838068 |
T |
|
| Q |
302 |
ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc |
401 |
Q |
| |
|
|||||| |||| ||||||||| | ||| || ||||||||||||||||||| |||||||||||| | ||||||||| | || |||||||||||||||| |
|
|
| T |
16838069 |
ttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgttactagcatgccctataagaaactctacaatc |
16838168 |
T |
|
| Q |
402 |
ttctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
| |||||||||||||||||||||||||| | | ||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16838169 |
tgctctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctc |
16838260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 17069604 - 17070085
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| | | || | |||| |||| ||||||||| | || |||| ||| ||||||||||||||| |
|
|
| T |
17069604 |
gtagtgactaaaattgatgcacctttc------tttccatttggtaacaaagacttgaagctattccatttcacttggtcatcactccacacatcatcaa |
17069697 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||| || ||| |||||| |||||||||||| | |||||| | |||||| ||| |
|
|
| T |
17069698 |
gaacaagcaaataccttttgctttgcaaaatttcttgaacctttttttgccttgactctaaagacaagagatctagattttttccaatggtgttttctat |
17069797 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||| | | |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||| || |
|
|
| T |
17069798 |
gatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatt |
17069897 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
||||| |||| ||||||||| | ||| || ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
17069898 |
tgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgtcactagcat---ttagaagaaactctacaatct |
17069994 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| |||| || |||| |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
17069995 |
gctctttatctttgtctcttccatatactttcggttcggtgatagcagaaatagtttggatctgttcatcatctcctcgttggtgctcctc |
17070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 16868066 - 16867583
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || |||| | |||| | || |||||||||| |||| |||||||| |||| |||||||||| |
|
|
| T |
16868066 |
gtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaa |
16867973 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttgga---------------ttttctac |
202 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || ||| ||| || | ||||||| | |||||| | || |||||| |
|
|
| T |
16867972 |
gaacaagcaaatactttttgttttgcaaaatttcttgaaccttttttctcaaggtttctaaagacaagagatctagattttttccaatggtgttttctgt |
16867873 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| ||||||||||| ||||||| |||||||| | | || |||||||||||| |||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
16867872 |
gatggactctaaaattttcatcaaactgaaatcgtccgaaa--cacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccact |
16867775 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
||||| |||| ||||||||| | ||| || |||||||||||| |||||| |||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
16867774 |
tgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatct |
16867678 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtg |
497 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867677 |
gctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttggcgccattcatcatctcctcgttggtgctcctctgtg |
16867583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 16797264 - 16797748
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | |||| | ||| |||| ||||||||| | || |||| ||| ||||||||||||||| |
|
|
| T |
16797264 |
gtagtgaccaaaattgatgcacctttc------tttccatttggcaacaatgacttgaacgtattccatttcacttggtcatcactccacacatcatcaa |
16797357 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| || ||| ||| ||| |||||||||| | |||| | | |||||| ||| |
|
|
| T |
16797358 |
gaacaagcaaatacctttggttttgcaaaatttcttgaaccttttttcgcaaggactctaaagacaagagttctagattttttccaatggtgttttctat |
16797457 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||| | | |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||| | |
|
|
| T |
16797458 |
gatagactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccact |
16797557 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
||||| |||| ||||||||| | ||| || ||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
16797558 |
tgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactggtactagcatgccctagaagaaactctacaatct |
16797657 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16797658 |
gttctttatctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctc |
16797748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 485
Target Start/End: Complemental strand, 18873250 - 18872771
Alignment:
| Q |
21 |
gtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaagaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| || ||| | | || |||| | |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
18873250 |
gtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaa |
18873151 |
T |
|
| Q |
121 |
caagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatt---------------ttctacgac |
205 |
Q |
| |
|
|||||| |||| |||||||||||||||| | ||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||| || |
|
|
| T |
18873150 |
caagtagataccttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgat |
18873051 |
T |
|
| Q |
206 |
ggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttga |
305 |
Q |
| |
|
||||| |||||||||||| | || ||||| | | |||||||||||||||| |||||| ||| ||||| | |||||||||||||||||||| |||| |
|
|
| T |
18873050 |
ggactgcaaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaagaccacttga |
18872951 |
T |
|
| Q |
306 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttct |
405 |
Q |
| |
|
||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||||| |||| | || |
|
|
| T |
18872950 |
gcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgct |
18872851 |
T |
|
| Q |
406 |
ctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|| | || ||||||||||||| | |||||||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
18872850 |
ctctgtcacgatctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatctcctcgttgg |
18872771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 485
Target Start/End: Complemental strand, 18806256 - 18805777
Alignment:
| Q |
21 |
gtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaagaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||| | | || |||| | |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
18806256 |
gtgaccaaaattgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaa |
18806157 |
T |
|
| Q |
121 |
caagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatt---------------ttctacgac |
205 |
Q |
| |
|
|||||| |||| |||||||||||||||||| || || | ||||||||||| ||||||| |||||||| |||| | ||||| || |
|
|
| T |
18806156 |
caagtagataccttttgttttgcaaaattttttgaacttccttttgcattgattctaaagacgagagatctggactttttccaacggcggattctatgat |
18806057 |
T |
|
| Q |
206 |
ggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttga |
305 |
Q |
| |
|
||||| |||||||||||| | || ||||| | | |||||||||||||||| |||||| ||| ||||| | ||||||||||||||||| || |||| |
|
|
| T |
18806056 |
ggactgcaaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaataccacttga |
18805957 |
T |
|
| Q |
306 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttct |
405 |
Q |
| |
|
||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||||| |||| | || |
|
|
| T |
18805956 |
gcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgct |
18805857 |
T |
|
| Q |
406 |
ctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|| | || ||||||||||||| | |||||||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
18805856 |
ctctgtcacgatctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatctcctcgttgg |
18805777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 484
Target Start/End: Original strand, 16788067 - 16788538
Alignment:
| Q |
20 |
agtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | |||| | |||| |||| |||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
16788067 |
agtgaccaaaattgatgcacctttcg------tttcatattgcaacaaagacttgaacttattccatttctcttggtcttcattccacacatcatcaaga |
16788160 |
T |
|
| Q |
120 |
acaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctacga |
204 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||| || ||| ||| |||||||||| |||| ||||||| |||||||| ||| || |
|
|
| T |
16788161 |
acaagtagataccttttgttttg-aaaatttcttgaaccttctttcgcattgactccaaagatgagagatctggattttttccaattgtgtcttctatga |
16788259 |
T |
|
| Q |
205 |
cggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatg-tgtcttcaccctttcatcattgaagactgttt |
303 |
Q |
| |
|
||| ||||||||| |||||| | ||||||||| ||| |||| | | ||||||| ||| ||||||||| | |||| || ||||||| ||| | ||| || |
|
|
| T |
16788260 |
cgg-ctctaaaaccttcatcatgctgaaatcatctgaaacaaaaatccatattttcaggtcaaaatggtttctt-actctttcattgttgtatactaatt |
16788357 |
T |
|
| Q |
304 |
gagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatctt |
403 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||||| | ||| ||| ||| ||||| |||||| |||||||| |
|
|
| T |
16788358 |
gagcaagtgttgtttttccatattcacctaggccaacaatggaatagacagagagttcttctttgtcagtagtatgctttagaggaaactttacaatctg |
16788457 |
T |
|
| Q |
404 |
ctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttg |
484 |
Q |
| |
|
|||||||| | ||| |||||||||| || ||||| ||||| |||||||||||||||||| |||||| | |||||||| |
|
|
| T |
16788458 |
ctctttatatatgtaccttccatatactacaggttcggtgacgacagaagtagtttggcgccactcatcagcacctcgttg |
16788538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 16843925 - 16844398
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||| | |||| | ||||||||| |||| ||||| | | |||||||| |||| ||||| |||| |
|
|
| T |
16843925 |
gtagtgaccaaaactgatgcaccttttgttccatttccacattgcaaaaaagacatgaacttatcccatttatgttggtcttcattccaaacatcgtcaa |
16844024 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
| |||||||||||| |||||||||||||||| || || ||| | |||||||| | |||||||||||| |||||||||| |||| |
|
|
| T |
16844025 |
ggacaagtaaataccttttgttttgcaaaatagtttgaaccttttcttgcattgcttgtaaagtcgagaggtttggatttttcccatctttggattctac |
16844124 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| |||| |||| |||||| | || |||||| | | |||||| ||||||||| |||| |||||| || || ||||| |||||||||||||| | |
|
|
| T |
16844125 |
gatcgactgcaaaatcttcatcatactaaaatcatcagaaacacaaacccatattttcaaaggaaaatgagtatttaccctctcatcattgaagaccagt |
16844224 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||||||||| |||| |||| | ||| ||||||| |||||||||||||| |||| || |
|
|
| T |
16844225 |
tgagcaagtgctgtctttccatatccaccatgaccaacaatggaatagacagagagtccttccttgtcaatagcatgccttagaagaaactcaacaacct |
16844324 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatct |
476 |
Q |
| |
|
| || ||||| | | ||||||| | | ||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
16844325 |
tttccttatcctcatttcttccaagaatttggggttcggtaatgaaagaagtagtttggcgccattcatcatct |
16844398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 228 - 491
Target Start/End: Original strand, 16781422 - 16781685
Alignment:
| Q |
228 |
ctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttgagcaagtgctgtttttccatatc |
327 |
Q |
| |
|
||||||||| ||| |||||| ||||||||| |||| |||||||| || | || |||||||| ||| | || ||||||||||| |||||||||||||| |
|
|
| T |
16781422 |
ctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcatccttgtataccaattgagcaagtgttgtttttccatatc |
16781521 |
T |
|
| Q |
328 |
caccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccata |
427 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||| | |||||||| || |||||| |||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
16781522 |
cacctaggccaacaatggaatagacagagagatcttcactattgctagcatgcctcagaagatactcaacaatttgttctttatctctgtctcttccata |
16781621 |
T |
|
| Q |
428 |
tagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcc |
491 |
Q |
| |
|
|| | | | |||||||| ||| |||||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
16781622 |
tactttggattcagtgatgacagaggtagtttgccgccactcttcatcttctggttggtgctcc |
16781685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 16781282 - 16781369
Alignment:
| Q |
103 |
tccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatt |
190 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||| ||||| || || ||||||||| | ||||||||||||||||| |
|
|
| T |
16781282 |
tccacacatcatccagtacaagtaaatactttttgctttgcaaaacttcttgaacttttttttgcattaattctaaagtcgagagatt |
16781369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 18794273 - 18794208
Alignment:
| Q |
420 |
cttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18794273 |
cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttgg |
18794208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 485
Target Start/End: Complemental strand, 18870443 - 18870294
Alignment:
| Q |
336 |
ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtatcg |
435 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||| |||||| ||||| |||||||| | || |||||| |||| ||||||||||| | | | | |
|
|
| T |
18870443 |
ccaacaatggaatagaaagagagttcttcactgtcaagagcatgacttagcagaaactcaaaaactttctctctatcacgatctcttccataaacttttg |
18870344 |
T |
|
| Q |
436 |
gttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18870343 |
gttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttgg |
18870294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 12947 - 13431
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |||| |||| |||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
12947 |
gtagtgaccaaaattgatgcacctttc------tttccatgttgcaacgaagacttgaacttattccatttctcttggtcttcactccacacatcatcaa |
13040 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
13041 |
gaacaagcaaataccttttgttttgcaaaatttcttgaaccttttttcgcattgactctaaagaggagagatttggattttttccaatggtgtcttctat |
13140 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| |||||||||||| |||||| | ||||||||| | | |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
13141 |
gatggactctaaaaccttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatt |
13240 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||| |||||||||||||||| |
|
|
| T |
13241 |
tgagcaagtgttgtttttccatatccaccgtggccaacaatggaatagacagagagttcttcactctcactggcgtgccttagcagaaactctacaatct |
13340 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
13341 |
gttctttatctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatctcgtcgttggcgctcctc |
13431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 8605 - 9025
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | |||| | |||| | || |||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
8605 |
gtagtgatcaaaattgatgcacctttc------tttccatttagcaacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaa |
8698 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||| || ||| | ||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
8699 |
gaacaagtaaatacctatttttttgcaaaatttcttgaaccttttgttgcattgactctaaagacgagagatgtggattttttccaatggtgttttctat |
8798 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| ||||||||||||||||||| ||| |||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8799 |
gatggactctaaaactttcatcgcattgatatcaccagaaacacacacccatattttcaagtcaaaatgtgtctttaccctttcatcattgaagactgtt |
8898 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| || | |||||||||||||||||| | |
|
|
| T |
8899 |
tgagcaagtgttgtttttccatatccaccgtggccaacaatagaatagacagagagttcttcactgtcaccagcgtgccgtagaagaaactctacaatat |
8998 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatata |
429 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8999 |
gctctttatctttgtctcttccatata |
9025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 26947 - 26997
Alignment:
| Q |
103 |
tccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctt |
153 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
26947 |
tccacacagcatccagtacaagtaaatactttttgctttgcaaaacttctt |
26997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 37585 - 38066
Alignment:
| Q |
18 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| || |||| | |||| | || |||||||||| |||| |||||||| |||| |||||||||| |
|
|
| T |
37585 |
gtagtgaccaatattgatgcacctttc------tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaacatcatcaa |
37678 |
T |
|
| Q |
118 |
gaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatttt---------------ctac |
202 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||| || ||| |||| | |||||||||||| | |||||| | | |||| ||| |
|
|
| T |
37679 |
gaacaagcaaataccttttgttttgcaaaatatcttgaaccttttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctat |
37778 |
T |
|
| Q |
203 |
gacggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtt |
302 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||| | | |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||| || |
|
|
| T |
37779 |
gatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatt |
37878 |
T |
|
| Q |
303 |
tgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatct |
402 |
Q |
| |
|
||||| |||| ||||||||| | ||| || |||||||||||| ||||| |||||||||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
37879 |
tgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacaaagagttcttcactttcgctggcat---ttagaagaaactctacaatct |
37975 |
T |
|
| Q |
403 |
tctctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctc |
493 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37976 |
gttctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcgttgatgctcctc |
38066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 228 - 494
Target Start/End: Complemental strand, 7053104 - 7052838
Alignment:
| Q |
228 |
ctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttgagcaagtgctgtttttccatatc |
327 |
Q |
| |
|
||||||||| ||| |||||| ||||||||| ||||||||||||| || | || |||||||| || |||| ||||||||||| |||||||||||||| |
|
|
| T |
7053104 |
ctgaaatcatctgaaacacaaacccatattttcaagtcaaaatgggtgcttacactttcatcgttatagaccaattgagcaagtgttgtttttccatatc |
7053005 |
T |
|
| Q |
328 |
caccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccata |
427 |
Q |
| |
|
||| |||||||||||||| ||||| || |||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7053004 |
cactgtggccaacaatgggatagatagagagttcttcactgtcactagcatgcctcagaagaaactcgacaatcttctctttatctttgtctcttccata |
7052905 |
T |
|
| Q |
428 |
tagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcctct |
494 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
7052904 |
taccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctct |
7052838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 429
Target Start/End: Complemental strand, 38939207 - 38938996
Alignment:
| Q |
218 |
tttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttgagcaagtgctgtt |
317 |
Q |
| |
|
||||||| | ||||||||| ||| |||||| ||||||||| |||| |||||||| || | || ||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
38939207 |
tttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcattgttgtagaccaattgagcaagtgttgtt |
38939108 |
T |
|
| Q |
318 |
tttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgt |
417 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| |||||||| | ||||||| || |||||| |||| ||||| | ||||||||||||| |
|
|
| T |
38939107 |
tttccatatccacctagaccaacaatggaatagacagagagatcttcactgttgttagcatgcctcagaagatactcaacaatttgttctttatctttgt |
38939008 |
T |
|
| Q |
418 |
ctcttccatata |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38939007 |
ctcttccatata |
38938996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 7053253 - 7053149
Alignment:
| Q |
94 |
ggtcttcagtccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttgg |
193 |
Q |
| |
|
|||||||| |||| |||||||| | |||||||||||| ||||| ||||||||| ||||| || ||| |||||||| || |||| || |||||||| || |
|
|
| T |
7053253 |
ggtcttcattccaaacatcatctaatacaagtaaataccttttgctttgcaaaacttcttgaacctttttttgcatggattctagagaagagagattagg |
7053154 |
T |
|
| Q |
194 |
atttt |
198 |
Q |
| |
|
||||| |
|
|
| T |
7053153 |
atttt |
7053149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 38939337 - 38939250
Alignment:
| Q |
103 |
tccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatt |
190 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||| ||||||||| ||||| || || ||||||||||| || |||||| ||| ||| |
|
|
| T |
38939337 |
tccacacatcatccagtacaagtaaataccttttgctttgcaaaacttcttgaacttttttttgcattgattccaaagtcaagaaatt |
38939250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 485
Target Start/End: Original strand, 9454 - 9933
Alignment:
| Q |
21 |
gtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaagaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| || ||| | | || |||| | |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
9454 |
gtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcaatccacacatcatcaagaa |
9553 |
T |
|
| Q |
121 |
caagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatt---------------ttctacgac |
205 |
Q |
| |
|
|||||| ||| |||| ||||||||||| | ||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||| || |
|
|
| T |
9554 |
caagtagatatcttttattttgcaaaatatttttaaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgat |
9653 |
T |
|
| Q |
206 |
ggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttga |
305 |
Q |
| |
|
||||| |||||||||||| | | ||||| | | |||||||||||||||| |||||| ||| ||||| | ||||||||||||||||| || |||| |
|
|
| T |
9654 |
ggactgcaaaactttcatcatattaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaacaccacttga |
9753 |
T |
|
| Q |
306 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttct |
405 |
Q |
| |
|
||||||| ||||||||| | ||||| ||||||||||||||||| | |||||||||||| || | |||| |||||||||||||| |||| | || |
|
|
| T |
9754 |
gcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacngagagttcttcactatccacaacatgacttagaagaaactcaacaacttgct |
9853 |
T |
|
| Q |
406 |
ctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|| | || |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9854 |
ctctgtcacggtctcttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttgg |
9933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 485
Target Start/End: Original strand, 4774 - 5253
Alignment:
| Q |
21 |
gtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcaagaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| || ||| | | || |||| | |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
4774 |
gtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaa |
4873 |
T |
|
| Q |
121 |
caagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtcgagagatttggatt---------------ttctacgac |
205 |
Q |
| |
|
|||||| ||| |||||||||||||||| | ||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||| || |
|
|
| T |
4874 |
caagtagatatcttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgat |
4973 |
T |
|
| Q |
206 |
ggactctaaaactttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttga |
305 |
Q |
| |
|
||||| |||||||||||| | | ||||| | | |||||||||||||||| |||||| ||| ||||| | |||||||| |||||||| || |||| |
|
|
| T |
4974 |
ggactgcaaaactttcatcatattaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcctcattgaacaccacttga |
5073 |
T |
|
| Q |
306 |
gcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttct |
405 |
Q |
| |
|
||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||||| |||| | || |
|
|
| T |
5074 |
gcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgct |
5173 |
T |
|
| Q |
406 |
ctttatctttgtctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttgg |
485 |
Q |
| |
|
|| | || ||||||||||||| | ||||||||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5174 |
ctctgtcacgatctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatctcctcgttgg |
5253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 218 - 491
Target Start/End: Original strand, 9457 - 9730
Alignment:
| Q |
218 |
tttcatccttctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttgagcaagtgctgtt |
317 |
Q |
| |
|
||||||| | ||||||||| ||| |||||| ||||||||| |||| |||||||| || | || ||||| || ||| | || ||||||||||| |||| |
|
|
| T |
9457 |
tttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcttcgttgtaaaccaattgagcaagtgttgtt |
9556 |
T |
|
| Q |
318 |
tttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgt |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| |||||||| | |||||||| || |||||| |||| ||||| || ||||||||||||| |
|
|
| T |
9557 |
tttccatatccacctaggccaacaatggaatagacagagagatcttcactgttgctagcatgcctcagaagatactcaacaattttttctttatctttgt |
9656 |
T |
|
| Q |
418 |
ctcttccatatagtatcggttcagtgacagaagaagtagtttggcgccattcatcatctcctcgttggtgctcc |
491 |
Q |
| |
|
|||||||| ||| ||| | |||||||| | || |||||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
9657 |
ctcttccaaatactatggattcagtgatgaaggaggtagtttgccgccactcttcatcttctggttggtgctcc |
9730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 9327 - 9406
Alignment:
| Q |
103 |
tccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattgactctaaagtc |
182 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||| ||||| || || |||||||| || || |||||| |
|
|
| T |
9327 |
tccacacatcatcgagtacaagtaaatactttttgctttgcaaaacttcttgaacttttttttgcatcgattccaaagtc |
9406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 228 - 466
Target Start/End: Original strand, 13378414 - 13378652
Alignment:
| Q |
228 |
ctgaaatcacctgcaacacacacccatattgtcaagtcaaaatgtgtcttcaccctttcatcattgaagactgtttgagcaagtgctgtttttccatatc |
327 |
Q |
| |
|
||||||||| | | |||||| ||||||||| |||||||||| || || | || ||||||| ||| | || ||||||||||| |||||||||||||| |
|
|
| T |
13378414 |
ctgaaatcatcagaaacacaaacccatattttcaagtcaaagtgggtgcttacgttttcatcgttgtacaccaattgagcaagtgttgtttttccatatc |
13378513 |
T |
|
| Q |
328 |
caccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccata |
427 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| || | ||| |||| ||||||||| |||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
13378514 |
cacctaggccaacaatggaatagacagagatatcttctctgttacttgcatcccttagaagatactcaacaatttgttctttatctttgtctcttccata |
13378613 |
T |
|
| Q |
428 |
tagtatcggttcagtgacagaagaagtagtttggcgcca |
466 |
Q |
| |
|
|| | | | || ||||| |||||||||||||||||| |
|
|
| T |
13378614 |
tactttggatttagtgatgatagaagtagtttggcgcca |
13378652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 13378265 - 13378343
Alignment:
| Q |
94 |
ggtcttcagtccacacatcatcaagaacaagtaaatactttttgttttgcaaaatttctttaatcttattttgcattga |
172 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||| ||||| ||||||||| ||||| || || ||||||||||| |
|
|
| T |
13378265 |
ggtcttcattccacacatcatctagtacaagtaaataccttttgctttgcaaaacttcttgaacttttttttgcattga |
13378343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 30712428 - 30712388
Alignment:
| Q |
384 |
agaagaaactctacaatcttctctttatctttgtctcttcc |
424 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
30712428 |
agaagaaactcgacaatcttttctttatcattgtctcttcc |
30712388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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