View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_high_8 (Length: 447)
Name: NF11493_high_8
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 32991483 - 32991046
Alignment:
| Q |
1 |
tatctctataaatcatcaaagtcatgataaatnnnnnnnnntggtaaatcaattttctttttatatatagattctctacggctgcattacgatgtatcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
32991483 |
tatctctataaatcatcaaagtcatgataaataaaaaaaa-tggtaaatcaatttgctttttatatatagattctctacggctgctctacgatgcatcta |
32991385 |
T |
|
| Q |
101 |
actctcatgcaccgtaacacagccgtcgaggatctgagttcattgatcggtaccttttctttgttgggaagattgtgagttgcaaatttgccttccaatc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32991384 |
actctgatgcaccgtaacacagccgtcgaggatctgagttcattgatcggtaccttttctttgttgggaagattgtgagttgcaaatttgccttccaatc |
32991285 |
T |
|
| Q |
201 |
tgaattcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaacaaggttttggattccctt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32991284 |
tgaattcatgcataacccaattagtcttctctccttttggagctcttcctttatagaacacaagagtcttcttcataccaacaaggttttggattccttt |
32991185 |
T |
|
| Q |
301 |
tcctttgtgataaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattttctatctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32991184 |
tcctttgtgataaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattttctatctttc |
32991085 |
T |
|
| Q |
401 |
tgacnnnnnnngtaccattctttctctcccatctctgct |
439 |
Q |
| |
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|||| ||||||||||||||||||||||| |||| |
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|
| T |
32991084 |
tgacaaaaaaagtaccattctttctctcccatctttgct |
32991046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 194 - 397
Target Start/End: Original strand, 10317613 - 10317810
Alignment:
| Q |
194 |
tccaatctgaattcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaacaaggttttgga |
293 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || || ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
10317613 |
tccaatctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaag---ttggt |
10317709 |
T |
|
| Q |
294 |
ttccctttcctttgtgataaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattttct |
393 |
Q |
| |
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| | || |||||| || |||||||| |||||||| || |||||||| || || ||||||||||||||||| ||||| | || |||||||| || || |
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| T |
10317710 |
tacttttccctttg---tagatctctttatcttttccagttgctttccaatagcctgattcagttgctctattagttcttgttccagttggatacttcct |
10317806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 3893463 - 3893374
Alignment:
| Q |
192 |
cttccaatctgaattcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaa |
281 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| || ||||| || || |||||||||||||| ||||| ||||| || |||||||| |||| |
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| T |
3893463 |
cttctaatcggaattcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 45059075 - 45058997
Alignment:
| Q |
204 |
attcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaac |
282 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| || || ||||||||||| ||||| |||||||| |||||||||||||| |
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|
| T |
45059075 |
attcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaac |
45058997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 12276748 - 12276682
Alignment:
| Q |
204 |
attcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtctt |
270 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||| | |||||||| ||||| ||||||||||||||||| |
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|
| T |
12276748 |
attcatgcataatccaatcagtcttttgtccatgaggagctctacctttgtagaacacaagagtctt |
12276682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 12851317 - 12851249
Alignment:
| Q |
319 |
tttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggata |
387 |
Q |
| |
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||||||| ||||||| |||||||| | |||| | ||||||||||||||||||| |||| |||||||| |
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| T |
12851317 |
tttgtctcttcctgttgctttccaaaatccagctgcagttgctctatttgttcttgtaccagttggata |
12851249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 32897757 - 32897676
Alignment:
| Q |
204 |
attcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaacaag |
285 |
Q |
| |
|
|||||||||||||||| ||| | ||||| || || |||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
32897757 |
attcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaacaag |
32897676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 32897657 - 32897574
Alignment:
| Q |
310 |
ataaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattttct |
393 |
Q |
| |
|
|||||||||| | ||||| || || |||||||| ||||||| ||| |||||||||||||| | || ||| |||||||| ||||| |
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| T |
32897657 |
ataaatctctctatctttcccagttgctttccaataaccagcttctgttgctctatttgtacgcaaaccagttggatactttct |
32897574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 11462909 - 11462990
Alignment:
| Q |
204 |
attcatgcataacccaattagtcttttctccctttggagctcttcctttatagaacacaagagtcttcttcataccaacaag |
285 |
Q |
| |
|
|||||||||| ||||||||| | || ||||| || || ||||||||||| ||||| |||||||| |||||||| |||||||| |
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| T |
11462909 |
attcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaacaag |
11462990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 1059309 - 1059231
Alignment:
| Q |
312 |
aaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattt |
390 |
Q |
| |
|
||||||| |||||||| ||||| | |||||| || |||| | ||||||||||| ||||||| ||||||||||||||| |
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|
| T |
1059309 |
aaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatattt |
1059231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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