View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11493_low_11 (Length: 356)

Name: NF11493_low_11
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11493_low_11
NF11493_low_11
[»] chr7 (2 HSPs)
chr7 (10-338)||(22126356-22126684)
chr7 (10-338)||(40563765-40564093)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 22126356 - 22126684
Alignment:
Q  10 catcatcagaaacattgtgatctctaagttttaggtaaaacttttgtatgatatctgctgctggcttggacatccttattaagagaaatcaggaagaggc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22126356 catcagcagaaacattgtgatctctaagttttaggtaaaacttttgtatgatatctgctgctggcttggacatccttattaagagaaatcaggaagaggc 22126455  T
Q  110 agaaaataaatacttcaaaatttcctgagggattacttagaccagagtcagaaggtagatatgacattgaatcacctgggaaagacataactccttgcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22126456 agaaaataaatacttcaaaatttcctgagggattacttagaccagagtcagaaggtagatatgacattgaatcacctgggaaagacataactccttgcat 22126555  T
Q  210 atgcaatgtatttgcgaagaagttgaccaggtaatggaacaaaatcactgtctcttcgtctgtcaagtttcaatcttgaaattaaagaaccagatcttac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22126556 atgcaatgtatttgcgaagaagttgaccaggtaatggaacaaaatcactgtctcttcgtctgtcaagtttcaaccttgaaattaaagaaccagatcttac 22126655  T
Q  310 acccaaatctatgccttcaacattctgtg 338  Q
    ||||||||||||||||||| |||||||||    
T  22126656 acccaaatctatgccttcagcattctgtg 22126684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 40563765 - 40564093
Alignment:
Q  10 catcatcagaaacattgtgatctctaagttttaggtaaaacttttgtatgatatctgctgctggcttggacatccttattaagagaaatcaggaagaggc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40563765 catcagcagaaacattgtgatctctaagttttaggtaaaacttttgtatgatatctgctgctggcttggacatccttattaagagaaatcaggaagaggc 40563864  T
Q  110 agaaaataaatacttcaaaatttcctgagggattacttagaccagagtcagaaggtagatatgacattgaatcacctgggaaagacataactccttgcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40563865 agaaaataaatacttcaaaatttcctgagggattacttagaccagagtcagaaggtagatatgacattgaatcacctgggaaagacataactccttgcat 40563964  T
Q  210 atgcaatgtatttgcgaagaagttgaccaggtaatggaacaaaatcactgtctcttcgtctgtcaagtttcaatcttgaaattaaagaaccagatcttac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40563965 atgcaatgtatttgcgaagaagttgaccaggtaatggaacaaaatcactgtctcttcgtctgtcaagtttcaaccttgaaattaaagaaccagatcttac 40564064  T
Q  310 acccaaatctatgccttcaacattctgtg 338  Q
    ||||||||||||||||||| |||||||||    
T  40564065 acccaaatctatgccttcagcattctgtg 40564093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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