View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11493_low_12 (Length: 337)
Name: NF11493_low_12
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 37862914 - 37863232
Alignment:
| Q |
1 |
tgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37862914 |
tgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcag |
37863013 |
T |
|
| Q |
101 |
tcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37863014 |
tcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggc |
37863113 |
T |
|
| Q |
201 |
aacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37863114 |
aacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaa |
37863213 |
T |
|
| Q |
301 |
ctgcagtgatctccgaaca |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37863214 |
ctgcagtgatctccgaaca |
37863232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 37858888 - 37859206
Alignment:
| Q |
1 |
tgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcag |
100 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| || |
|
|
| T |
37858888 |
tgtaatcagagatacctaaaggttgaaaggcctcagcaagagctttctcaatgttctttgagataagaccaggaacatccttgaggagatggaatgtaag |
37858987 |
T |
|
| Q |
101 |
tcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggc |
200 |
Q |
| |
|
|| |||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||| || |||||||||| ||| |
|
|
| T |
37858988 |
cccgacttcacgaaggtgaccgtcaattgctccttcactatctggaaggatcgtttgtgcagtccataccaattcaaacaagggtttctcaacttgtggt |
37859087 |
T |
|
| Q |
201 |
aacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaa |
300 |
Q |
| |
|
|| || |||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
37859088 |
aatgggtctgaacctacgatcacagctgctgcaccatctccaaacaatgcttgccccacaaggctatcaagatgagtgtcactgggtccacggaaagtaa |
37859187 |
T |
|
| Q |
301 |
ctgcagtgatctccgaaca |
319 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
37859188 |
ctgcagttatctctgaaca |
37859206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 39030669 - 39030378
Alignment:
| Q |
1 |
tgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcag |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| || |||||||||| |||| || ||| ||||| || |
|
|
| T |
39030669 |
tgtaatcggagatattcaaaggttgaaaggcctcaacaagagttttctcaatgttctttgagatgaggtcaggaacatctttgatgatatgtaatgttag |
39030570 |
T |
|
| Q |
101 |
tcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggc |
200 |
Q |
| |
|
||||||||||| | |||| | | ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39030569 |
tcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatggtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggc |
39030470 |
T |
|
| Q |
201 |
aacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacg |
292 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
39030469 |
aacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgcccgtcccataagactatcaagatcagtatcactaggtccacg |
39030378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 35251342 - 35251091
Alignment:
| Q |
75 |
acatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaatt |
174 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| | | | |
|
|
| T |
35251342 |
acatccttgagaagatggaatgttagtccaacctcacgaaggtgaccatcaatagctccttgactatcaggaaggattgtttgtgcagtccactctagct |
35251243 |
T |
|
| Q |
175 |
caaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagct----gctgca---ccatctccaaacaatgcctgccccacaagactat |
267 |
Q |
| |
|
|||||||||| ||||||| || || || |||||||||||||| ||||||||| |||||| ||||||||||||||||| || ||||| ||||||| |
|
|
| T |
35251242 |
caaacaaaggtctctcaacctcaggtaatggatctgaaccaacgatcacagctgcaggctgcagcgccatctccaaacaatgcttgtcccacgagactat |
35251143 |
T |
|
| Q |
268 |
caagatgagtatcactaggtccacggaaagtaactgcagtgatctccgaaca |
319 |
Q |
| |
|
||||||| || |||||||| ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
35251142 |
caagatgggtgtcactagggccacgaaaagtcactgcagtgatctctgaaca |
35251091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 5310946 - 5310704
Alignment:
| Q |
50 |
aatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacg |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
5310946 |
aatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
5310847 |
T |
|
| Q |
150 |
attgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatg |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || ||||||||||| | ||| || || |||||||||||||||| |
|
|
| T |
5310846 |
attgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacaatg |
5310747 |
T |
|
| Q |
250 |
cctgccccacaagactatcaagatgagtatcactaggtccacg |
292 |
Q |
| |
|
| ||||| ||||| || || | ||||||||||| || ||||| |
|
|
| T |
5310746 |
cttgcccaacaaggctgtccaagtgagtatcactggggccacg |
5310704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 309
Target Start/End: Original strand, 46706553 - 46706820
Alignment:
| Q |
42 |
gctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactat |
141 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| || || || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
46706553 |
gctttatcaatgttctttgaaacaatcccaggaacatcttttagaaggtggaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactat |
46706652 |
T |
|
| Q |
142 |
ctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctcc |
241 |
Q |
| |
|
||||| | |||||||||| ||||||||||| ||||| | ||| ||||||| |||||| | ||||| ||||||||||| | || || || | |||| |
|
|
| T |
46706653 |
ctggagcaattgtttgtgaagtccaaaccatctcaaatataggtttctcaatttctggtactggatcagaaccaacaataagtgcagcagctctgactcc |
46706752 |
T |
|
| Q |
242 |
aaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
||||| ||| ||||| ||||| || || | |||||||||||||| || ||||| || |||||||||| |
|
|
| T |
46706753 |
aaacagtgcttgcccaacaaggctgtccaagtgagtatcactagggccgcggaatgtgactgcagtga |
46706820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 295
Target Start/End: Original strand, 5289271 - 5289515
Alignment:
| Q |
51 |
atgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacga |
150 |
Q |
| |
|
||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| |||||||| |||||||| |||||||||||||| ||| | | |
|
|
| T |
5289271 |
atgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtggccatcaatggctccttcactatccggagcaa |
5289370 |
T |
|
| Q |
151 |
ttgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgc |
250 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || ||||||||||| | ||| || || ||||||||||||| ||| |
|
|
| T |
5289371 |
ttgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacagtgc |
5289470 |
T |
|
| Q |
251 |
ctgccccacaagactatcaagatgagtatcactaggtccacggaa |
295 |
Q |
| |
|
||||| ||||| || || | ||||||||||| || |||||||| |
|
|
| T |
5289471 |
ttgcccaacaaggctgtccaagtgagtatcactggggccacggaa |
5289515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 5303045 - 5302803
Alignment:
| Q |
50 |
aatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacg |
149 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
5303045 |
aatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
5302946 |
T |
|
| Q |
150 |
attgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatg |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || || |||||||| | ||| || || ||||||||||| | || |
|
|
| T |
5302945 |
attgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtacggggtcagagccaacaataagagcagcagctccatctccaaatagtg |
5302846 |
T |
|
| Q |
250 |
cctgccccacaagactatcaagatgagtatcactaggtccacg |
292 |
Q |
| |
|
| || || |||||||| || | |||||||||||||| ||||| |
|
|
| T |
5302845 |
cttgtccaacaagactgtccaagtgagtatcactagggccacg |
5302803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 5284857 - 5284615
Alignment:
| Q |
50 |
aatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacg |
149 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
5284857 |
aatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
5284758 |
T |
|
| Q |
150 |
attgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatg |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| |||||| |||||| | || || || |||||||| | ||| || || ||||||||||| | || |
|
|
| T |
5284757 |
attgtttgtgcagtccaaaccatctcaaatataggtctctcaatttctggtattgggtcagagccaacaataagagcagcagctccatctccaaatagtg |
5284658 |
T |
|
| Q |
250 |
cctgccccacaagactatcaagatgagtatcactaggtccacg |
292 |
Q |
| |
|
| || || |||||||| || | |||||||| ||||| ||||| |
|
|
| T |
5284657 |
cttgtccaacaagactgtctaagtgagtatcgctagggccacg |
5284615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 5315660 - 5315418
Alignment:
| Q |
50 |
aatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacg |
149 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
5315660 |
aatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
5315561 |
T |
|
| Q |
150 |
attgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatg |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| | |||||| | || || || |||||||| | ||| || || ||||||||||| | || |
|
|
| T |
5315560 |
attgtttgtgcagtccaaaccatctcaaatataggtttctctatttctggtactgggtcagagccaacaataagagcagccgctccatctccaaatagtg |
5315461 |
T |
|
| Q |
250 |
cctgccccacaagactatcaagatgagtatcactaggtccacg |
292 |
Q |
| |
|
| || || ||||| || || | |||||||||||||| ||||| |
|
|
| T |
5315460 |
cttgtccaacaaggctgtctaagtgagtatcactaggaccacg |
5315418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 307
Target Start/End: Complemental strand, 1478556 - 1478291
Alignment:
| Q |
42 |
gctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactat |
141 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| || || || || ||||| || || ||||| ||||||||||||||||| ||||| ||||| | |
|
|
| T |
1478556 |
gctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaaggtgaccatcaatggctccctcactgt |
1478457 |
T |
|
| Q |
142 |
ctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctcc |
241 |
Q |
| |
|
||||| | |||||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || ||||||||||| | || || ||||||||||| |
|
|
| T |
1478456 |
ctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagcaccatctcc |
1478357 |
T |
|
| Q |
242 |
aaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagt |
307 |
Q |
| |
|
||| | ||| || || |||||||| || | ||||||||||||||| |||||||| || |||||||| |
|
|
| T |
1478356 |
aaatagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagt |
1478291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 307
Target Start/End: Complemental strand, 1482750 - 1482485
Alignment:
| Q |
42 |
gctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactat |
141 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| || || || || ||||| || || ||||| ||||| ||||| ||||| || || ||||| | |
|
|
| T |
1482750 |
gctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaagatgaccgtcaatggccccctcactgt |
1482651 |
T |
|
| Q |
142 |
ctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctcc |
241 |
Q |
| |
|
||||| | |||||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || ||||||||||| | || || || |||||||| |
|
|
| T |
1482650 |
ctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagctccatctcc |
1482551 |
T |
|
| Q |
242 |
aaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagt |
307 |
Q |
| |
|
||| | ||| || || |||||||| || | ||||||||||||||| |||||||| || |||||||| |
|
|
| T |
1482550 |
aaagagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagt |
1482485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 70 - 309
Target Start/End: Complemental strand, 1505506 - 1505267
Alignment:
| Q |
70 |
caggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaac |
169 |
Q |
| |
|
|||||||||| || || || || ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
1505506 |
caggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggctccttcgctatcaggcgcgattgtttgtgcagtccaaac |
1505407 |
T |
|
| Q |
170 |
caattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatca |
269 |
Q |
| |
|
|| |||||| | ||| ||||||| |||||| | ||||||||||||||||| | || || || ||||||||||| | || || || ||||| || || |
|
|
| T |
1505406 |
catttcaaatataggtttctcaatttctggtattggatctgaaccaacaattagtgcagcagctccatctccaaatagagcttgtccaacaaggctgtcc |
1505307 |
T |
|
| Q |
270 |
agatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
| |||||||||||||| || || || || |||||||||| |
|
|
| T |
1505306 |
aagtgagtatcactagggccgcgaaatgtgactgcagtga |
1505267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 1509721 - 1509432
Alignment:
| Q |
1 |
tgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcag |
100 |
Q |
| |
|
||||||| ||||| || || || ||||||||||||| || |||| |||||||| |||||||||| ||| ||||| || || ||| | ||||| || |
|
|
| T |
1509721 |
tgtaatcagagatgtttaatggttgaaatgcctcaatcagtgcttaatcaatgtt-tttgagacagtcacagagacatctttaagaagacgaaatgttag |
1509623 |
T |
|
| Q |
101 |
tcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggc |
200 |
Q |
| |
|
||| |||| ||||||||||| ||||| || |||||||||| |||| | |||||||||||||||||||||| ||||| | || ||||||| |||||| |
|
|
| T |
1509622 |
tccaacttcacgaaggtgaccgtcaatggcaccttcactatttggagcaattgtttgtgcagtccaaaccatctcaaatatagatttctcaatttctggt |
1509523 |
T |
|
| Q |
201 |
aacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccac |
291 |
Q |
| |
|
| || || | ||||||||| | || || || ||||||||||| ||||| || || |||||||| || | ||||||||||| ||| |||| |
|
|
| T |
1509522 |
acagggtcagtaccaacaatgagtgcagcagctccatctccaaataatgcttgtccaacaagactgtccaaatgagtatcaccagggccac |
1509432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 309
Target Start/End: Complemental strand, 1492698 - 1492458
Alignment:
| Q |
69 |
ccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaa |
168 |
Q |
| |
|
||||||||||| || || || || ||||| | || ||||| ||||| ||||||||||| || ||||||||||| ||| | ||||||||||| ||||||| |
|
|
| T |
1492698 |
ccaggaacatctttaagaaggtgaaatgttaacccagcttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgctgtccaaa |
1492599 |
T |
|
| Q |
169 |
ccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatc |
268 |
Q |
| |
|
|| ||||| | ||| || |||| |||||| | |||||| || |||||||| | || ||||| ||||||||||| | ||| || || |||||||| || |
|
|
| T |
1492598 |
tcatctcaaatataggtttttcaatttctggtaccggatcagacccaacaataagtgcagctgctccatctccaaatagtgcttgtccaacaagactgtc |
1492499 |
T |
|
| Q |
269 |
aagatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
| || |||||||| || ||||| || || |||||||||| |
|
|
| T |
1492498 |
caagtgtgtatcactgggaccacgaaatgtgactgcagtga |
1492458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 1499733 - 1499647
Alignment:
| Q |
106 |
cttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaa |
192 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||| | | | |||||||||||||||||||| || ||||| ||||| ||||||| |
|
|
| T |
1499733 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgcagtccaaactaactcaaataaaggtttctcaa |
1499647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 44129143 - 44128864
Alignment:
| Q |
30 |
gcctcaacaagagctttctcaatgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatag |
129 |
Q |
| |
|
|||||||| | |||||| | ||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| | |
|
|
| T |
44129143 |
gcctcaaccaaagctttattgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatgg |
44129044 |
T |
|
| Q |
130 |
ctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgc |
229 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||| | || ||||||| |||||| | ||||||||||||||||| | || || |
|
|
| T |
44129043 |
ctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagc |
44128944 |
T |
|
| Q |
230 |
tgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
|| ||||||||||| | ||||| || ||||| || || | |||||||||||||| || || || || |||||||||| |
|
|
| T |
44128943 |
agctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtga |
44128864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 309
Target Start/End: Complemental strand, 44133327 - 44133069
Alignment:
| Q |
51 |
atgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacga |
150 |
Q |
| |
|
||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
44133327 |
atgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaa |
44133228 |
T |
|
| Q |
151 |
ttgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgc |
250 |
Q |
| |
|
||||||||||||||||||||| ||||| | || ||||||| |||||| | ||||||||||||||||| | || || || ||||||||||| | || |
|
|
| T |
44133227 |
ttgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggc |
44133128 |
T |
|
| Q |
251 |
ctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
||| || ||||| || || | |||||||||||||| || || || || |||||||||| |
|
|
| T |
44133127 |
ctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtga |
44133069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 309
Target Start/End: Complemental strand, 44141749 - 44141491
Alignment:
| Q |
51 |
atgttctttgagacagggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacga |
150 |
Q |
| |
|
||||||||||| ||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||| ||||| || ||||||||||||||| | | |
|
|
| T |
44141749 |
atgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggccccttcactatctggagcaa |
44141650 |
T |
|
| Q |
151 |
ttgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgc |
250 |
Q |
| |
|
||||||||||||||||||||| ||||| | || ||||||| |||||| | ||||||||||||||||| | || || || ||||||||||| | ||| |
|
|
| T |
44141649 |
ttgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagtgc |
44141550 |
T |
|
| Q |
251 |
ctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtga |
309 |
Q |
| |
|
|| || ||||| || || | |||||||||||||| || || || || |||||||||| |
|
|
| T |
44141549 |
ttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtga |
44141491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 24163438 - 24163505
Alignment:
| Q |
125 |
aatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaa |
192 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |||||||| || ||||| | ||| ||||||| |
|
|
| T |
24163438 |
aatagctccttcactatttggagcgattgtttgtgctgtccaaactaactcaaatagaggtttctcaa |
24163505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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