View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_low_14 (Length: 299)
Name: NF11493_low_14
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10283834 - 10284108
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10283834 |
ctcaggagccactttaggattcaaatttgaaccaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctcctgcataatgtctcagc |
10283933 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10283934 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccagttgcttaatcctg |
10284033 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatg |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284034 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatg |
10284108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10243010 - 10243284
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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| T |
10243010 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10243109 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
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||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
10243110 |
tttttcacataaggttccattgcaccagtcatgatcccttgaacatacttaacattaggaaaaagctctggtatcagtccataccaattgctcaatccta |
10243209 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
10243210 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagttttgacattgcagttctaatggatg |
10243284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10264895 - 10265169
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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| T |
10264895 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagcaccatattcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10264994 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
10264995 |
tttttcaagtaatgttccattgaacctgtcatgattcctagaacatacttaacattaggaaaaagttctggtatcaatccataccaatcgctcaatccta |
10265094 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
10265095 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagtttagacatagcagttctaatggatg |
10265169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 10272592 - 10272862
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| ||||||| ||||||| | |
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| T |
10272592 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaccaaaggaacctctcctgcatagtgtctcaac |
10272691 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |
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| T |
10272692 |
tttttcaagtaatgttccattgaacctgtcatgatccctagaagatacttagcattagggaaaagctccggtatcaatccataccaattgctcaatccta |
10272791 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
10272792 |
tgcatttcttgtggatcaagttagctagttcaggatttggtgtcagcagtttagacatagcagttctaatg |
10272862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 13979838 - 13979952
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||| ||||||||||| | || ||| ||||| |||||||| | || ||||| ||| ||||||||||| | |
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| T |
13979838 |
tacttcgcattaggaaacaactctggtaacaaaccataccaattattcaaccctagacattttttgtggattatgtcagctaattctggatttggtttga |
13979937 |
T |
|
| Q |
246 |
gcaattttgacatag |
260 |
Q |
| |
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||||||| ||||||| |
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| T |
13979938 |
gcaatttagacatag |
13979952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 48367773 - 48367646
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| | |||||||| | ||| |||| ||| ||||||||||| | |
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| T |
48367773 |
tactttgcattcggaaaaagctccggtatcaaaccataccagttgcttaatcctatacatcttttgtggattatgttcgctaattctggatttggtttga |
48367674 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatgga |
273 |
Q |
| |
|
||||||| ||||||||||||| |||||| |
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|
| T |
48367673 |
gcaatttagacatagcagttcgaatgga |
48367646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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