View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_low_16 (Length: 268)
Name: NF11493_low_16
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 13509713 - 13509487
Alignment:
| Q |
25 |
gagaattacattggaagccaaatcaaacacacttgatacaataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttag |
124 |
Q |
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|||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
13509713 |
gagaattacattggcaaccaaatcaagcacacttgatacaataaaatgcattacaacacgccatgtataaagcaagtaagcaattagctatatgctttag |
13509614 |
T |
|
| Q |
125 |
taatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatcac |
224 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13509613 |
taatcaggatttgccaaaacataaccttcaagagctttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatcac |
13509514 |
T |
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| Q |
225 |
ctttggtgaagtatttcacaccaagct |
251 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
13509513 |
ctttggtgaagtatttcacactaagct |
13509487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 13485935 - 13485733
Alignment:
| Q |
42 |
ccaaatcaaacacacttgatacaataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgccaa |
141 |
Q |
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||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13485935 |
ccaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgccaa |
13485836 |
T |
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| Q |
142 |
aacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatcacctttggtgaagtatttc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
13485835 |
aacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgcagcatcacctttggtgaagtatttc |
13485736 |
T |
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| Q |
242 |
aca |
244 |
Q |
| |
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||| |
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| T |
13485735 |
aca |
13485733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 13492374 - 13492172
Alignment:
| Q |
42 |
ccaaatcaaacacacttgatacaataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgccaa |
141 |
Q |
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||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13492374 |
ccaaatcaagcccacatgatataataaaatgcatcacaacacaccgtgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgccaa |
13492275 |
T |
|
| Q |
142 |
aacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatcacctttggtgaagtatttc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
13492274 |
aacgtaaccttcaagagccttgaaaagaccatcacccctagcttttccacccttgatttcctcttcactaggtgcagcatcacctttggtgaagtatttc |
13492175 |
T |
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| Q |
242 |
aca |
244 |
Q |
| |
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||| |
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| T |
13492174 |
aca |
13492172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 13515469 - 13515252
Alignment:
| Q |
25 |
gagaattacattggaagccaaatcaaacacacttgatacaataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttag |
124 |
Q |
| |
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|||||||||||||| | |||||| || |||||| |||| ||||||||| |||||||||| ||| |||| |||||||| || ||||||||||||| |
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| T |
13515469 |
gagaattacattggcatccaaattaagcacactagatataataaaatgtgtcacaacacaacatttatagagcaagcacaca-----ctatatgctttag |
13515375 |
T |
|
| Q |
125 |
t---aatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacat |
221 |
Q |
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| |||||||||| |||||| |||||| || | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||| |
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| T |
13515374 |
ttgtaatcaggattagccaaacagtaaccctctatagccttgaaaagaccatcacccttagctttgccactcttgagttcctcttcacttggagtaacat |
13515275 |
T |
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| Q |
222 |
cacctttggtgaagtatttcaca |
244 |
Q |
| |
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| ||||| ||||||||||||||| |
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| T |
13515274 |
ctccttttgtgaagtatttcaca |
13515252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 13501569 - 13501448
Alignment:
| Q |
124 |
gtaatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatca |
223 |
Q |
| |
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|||||||||||| |||||| |||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
13501569 |
gtaatcaggattagccaaacagtaaccctcaagggccttgaaaagaccatcacccttagctttgccactcttgagttcctcttcacttggagtaacatct |
13501470 |
T |
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| Q |
224 |
cctttggtgaagtatttcacac |
245 |
Q |
| |
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||||| || ||||||||||||| |
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| T |
13501469 |
ccttttgtaaagtatttcacac |
13501448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 13520801 - 13520769
Alignment:
| Q |
123 |
agtaatcaggatttgccaaaacgtaaccttcaa |
155 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
13520801 |
agtaatcaggatttgccaaaaggtaaccttcaa |
13520769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 13554736 - 13554692
Alignment:
| Q |
120 |
tttagtaatcaggatttgccaaaacgtaaccttcaagagccttga |
164 |
Q |
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|||| |||||||||||||||||||||||||| |||| ||||||| |
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| T |
13554736 |
tttaataatcaggatttgccaaaacgtaaccctcaatggccttga |
13554692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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