View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11493_low_3 (Length: 545)
Name: NF11493_low_3
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_3 |
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| [»] chr3 (4 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 37862329 - 37862886
Alignment:
| Q |
9 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862329 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
37862428 |
T |
|
| Q |
109 |
gaagattttatcagataacagaaaatcaaagatttatatcatgcagtgataatagtgattaattataggcataggaaacatgtgaaaagtaatcaatgag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37862429 |
gaagattttatcagataacagaaaatcaaagatttatatcacgcagtgataatcgtgattaattataggcataggaaacatgtggaaagtaatcaatgag |
37862528 |
T |
|
| Q |
209 |
gaacagaaatacaaagaaagaaagaatacatttgattttgg---------------------gggaaaatagaatttgttgacttagtaagatgcgagga |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
37862529 |
gaacagaaatacaaagaaagaaagaatacatttgattttgggcgaaaaggtaaagagcttgggggaaaatagaatttgttgacttagtaagatgtgagga |
37862628 |
T |
|
| Q |
288 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaag |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37862629 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcgagtccctcgccggttgtggcaag |
37862728 |
T |
|
| Q |
388 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862729 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgc |
37862828 |
T |
|
| Q |
488 |
attttctctggctttaagcctaatttgagttcaacttggtcaagaattgctggtccac |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862829 |
attttctctggctttaagcctaatttgagttcaacttggtcaagaattgctggtccac |
37862886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 254 - 543
Target Start/End: Complemental strand, 39030988 - 39030699
Alignment:
| Q |
254 |
aaatagaatttgttgacttagtaagatgcgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagca |
353 |
Q |
| |
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|||||||| |||||| ||| |||| ||| |||||||||||||| ||||||| |||||||||||||||||| |||||||| || ||||||| ||||||| |
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| T |
39030988 |
aaatagaacttgttgccttggtaaaatgtgaggatttaggtggccacactatggagcacaacagtctcgacagtgagtccaggtccaaaacttaaaagca |
39030889 |
T |
|
| Q |
354 |
caccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
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| |||||||||||||| || || |||||| ||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||| | | |||||||||||| |
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| T |
39030888 |
cgccccattcaagtccttctcctgttgtgccaagtccttcttcttttgacttcctcctcatctcatccaaaatgaataacacggatggacttgacatgtt |
39030789 |
T |
|
| Q |
454 |
accatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagttcaacttggtcaagaattgctggtcc |
543 |
Q |
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|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
39030788 |
accatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgtcc |
39030699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 306 - 545
Target Start/End: Original strand, 37858621 - 37858860
Alignment:
| Q |
306 |
ggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgattt |
405 |
Q |
| |
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||||||| |||||||| | ||||||||||| || ||||| || || ||||||||||| || |||||||| |||||||||||||||||||||||||| || |
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| T |
37858621 |
ggagcactacagtctcaacagtgagtccgggcccgaaaccaaataggacaccccattccagcccctcgcctgttgtggcaagtccgtcttcttttgactt |
37858720 |
T |
|
| Q |
406 |
catcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaag |
505 |
Q |
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| |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37858721 |
cctcctcatctcatccaagatgaataacacacatgcacttgacatgttaccatactcgctaagcacatgtcgagtggcttgcattttctctggctttaag |
37858820 |
T |
|
| Q |
506 |
cctaatttgagttcaacttggtcaagaattgctggtccac |
545 |
Q |
| |
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| ||||||| ||| |||||||| |||||||||||||||| |
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| T |
37858821 |
cttaatttggcttccacttggtccagaattgctggtccac |
37858860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 40421178 - 40421227
Alignment:
| Q |
410 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccata |
459 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||||||||||| ||||| |
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| T |
40421178 |
ctcatctcatccaatataaatatcacacaagcacttgacatgtttccata |
40421227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 412 - 545
Target Start/End: Complemental strand, 1482952 - 1482819
Alignment:
| Q |
412 |
catctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaat |
511 |
Q |
| |
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||||||||| ||||| || | ||||| ||||||||||||||||||||||| |||||||| | || |||||||| ||| || || || ||||||||||| |
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| T |
1482952 |
catctcatctaagataaacaatacacatgcacttgacatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaac |
1482853 |
T |
|
| Q |
512 |
ttgagttcaacttggtcaagaattgctggtccac |
545 |
Q |
| |
|
|| |||||||||| ||||||||||| ||||||| |
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| T |
1482852 |
ttttgttcaacttgatcaagaattgcgggtccac |
1482819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 401 - 545
Target Start/End: Complemental strand, 1478769 - 1478625
Alignment:
| Q |
401 |
gatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggct |
500 |
Q |
| |
|
|||||| | |||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||| | | |||||| | |||||| || || | |
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| T |
1478769 |
gatttctttctcatctcatccaagatgaacaatacacatgcgcttgacatgttaccatattcactaagtacttccctagtggccttcattttttcaggtt |
1478670 |
T |
|
| Q |
501 |
ttaagcctaatttgagttcaacttggtcaagaattgctggtccac |
545 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||| ||||||| |
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|
| T |
1478669 |
ttaagcctaacttttcttcaacttggtctagaattgcgggtccac |
1478625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 471
Target Start/End: Complemental strand, 1487540 - 1487370
Alignment:
| Q |
301 |
actacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttctttt |
400 |
Q |
| |
|
|||| |||| |||||||| || || || ||||| || ||||| ||||| | ||| ||||||| |||||| || || || || ||||||| |||| | |
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|
| T |
1487540 |
actatggagaacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtctcaagtccctcttgagct |
1487441 |
T |
|
| Q |
401 |
gatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtac |
471 |
Q |
| |
|
||| || | ||||| |||||||| || || | ||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
1487440 |
gatctctttctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcactaagtac |
1487370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 468
Target Start/End: Complemental strand, 1509884 - 1509816
Alignment:
| Q |
400 |
tgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaag |
468 |
Q |
| |
|
||||||| | |||||||| || |||||||| | ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
1509884 |
tgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatattaccatattcactaag |
1509816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 24163151 - 24163209
Alignment:
| Q |
410 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaag |
468 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24163151 |
ctcatctcatctaagatgaataatacacatgcacttgacatgttaccatattcactaag |
24163209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 545
Target Start/End: Complemental strand, 35251572 - 35251437
Alignment:
| Q |
410 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagccta |
509 |
Q |
| |
|
||||| ||||| || ||||| | |||||| |||||||||||||| ||||| || | |||| ||||||||||| || ||| || ||||| ||||||| |
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|
| T |
35251572 |
ctcatttcatctaaaatgaacaacacacaagcacttgacatgttcccataactactcaacacatttcgagtggcttccaatttttcaggcttcaagccta |
35251473 |
T |
|
| Q |
510 |
atttgagttcaacttggtcaagaattgctggtccac |
545 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
35251472 |
acttgtcctcaacttggtcaagaatcgctggtccac |
35251437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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