View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_low_4 (Length: 538)
Name: NF11493_low_4
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 51 - 520
Target Start/End: Complemental strand, 44716818 - 44716352
Alignment:
| Q |
51 |
aaaatggctttgctaacatgaattgttttgttgcaacatcatattgttaggccatatatagaaataatatggatgccttttacttcacaaatgttcccct |
150 |
Q |
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| T |
44716818 |
aaaatggctttgctaacatgaattgttttgttgcaacatcatattgttaggccatatatagaaata---tggatgccttttacttcacaaatgttcccct |
44716722 |
T |
|
| Q |
151 |
aatgctatgatgtagttatctatgagcatgggcaaaagcaaaacctcacttaaaacttaatgtgcaggtgagtaagcaagacatagaagacacatttgat |
250 |
Q |
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| T |
44716721 |
aatgctatgatgtagttatctatgagcatgggcaaaagcaaaacctcacttaaaacttaatgtgcaggtgagtaagcaagacatagaagacacatttgat |
44716622 |
T |
|
| Q |
251 |
gtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtccctacatgtgctgatcctaacctct |
350 |
Q |
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| T |
44716621 |
gtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtccctacatgtgctgatcctaacctct |
44716522 |
T |
|
| Q |
351 |
taaagaaaacagttcgtggagtatggggtcttgatgggtaagctcaatagtatacaattatcatatccacgttggacaattgccttatctcattatcaag |
450 |
Q |
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| T |
44716521 |
taaagaaaacagttcgtggagtatggggtcttgatgggtaagctcaatagtatacaattatcatatccacgttggacaattgccttatctcattatcaag |
44716422 |
T |
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| Q |
451 |
taaaaataatgttatcttttgctttacttggggttgatttaggtacattgtatctgattgtgactctgtg |
520 |
Q |
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| T |
44716421 |
taaaaataatgttatcttttgctttacttggggttgatttaggtacattgtatctgattgtgactctgtg |
44716352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 44716879 - 44716845
Alignment:
| Q |
18 |
aaaaagtggacaacacgatctttgcggggtgacaa |
52 |
Q |
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| T |
44716879 |
aaaaagtggacagcacgatctttgcggggtgacaa |
44716845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 230 - 394
Target Start/End: Original strand, 39089016 - 39089180
Alignment:
| Q |
230 |
gacatagaagacacatttgatgtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtcccta |
329 |
Q |
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| T |
39089016 |
gacatggaagacacgttcaatgtgccatttaggatgtgtgtgaaggaaggtaatgtggctagtgtgatgtgttcttacaatcaggttaatggtgtcccta |
39089115 |
T |
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| Q |
330 |
catgtgctgatcctaacctcttaaagaaaacagttcgtggagtatggggtcttgatgggtaagct |
394 |
Q |
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| T |
39089116 |
cttgtgctgaccccaatcttctaaagagaacaattcgtggtcaatggcatcttgatgggtaagct |
39089180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 519
Target Start/End: Original strand, 39089250 - 39089282
Alignment:
| Q |
487 |
atttaggtacattgtatctgattgtgactctgt |
519 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
39089250 |
atttaggtacattgtatcagattgtgactctgt |
39089282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 37610615 - 37610658
Alignment:
| Q |
278 |
ggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatgg |
321 |
Q |
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| T |
37610615 |
ggaaatgtagctagtgttatgtgttcctacaatcaagtaaatgg |
37610658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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