View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_low_6 (Length: 489)
Name: NF11493_low_6
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 56434545 - 56434097
Alignment:
| Q |
19 |
caactttgatttgacatgacagacactgagaggaagaaatctgtggagcaattgttatacactgaacaagaactcgctgcttctaaaggccgtgaaaagg |
118 |
Q |
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| T |
56434545 |
caactttgatttgacatgacagacactgagaggaagaaatctgtggagcaattgttatacactgaacaagaacttgctgcttctaaaggccgtgaaaagg |
56434446 |
T |
|
| Q |
119 |
ccctccaggatcaactcttgaaggaggttactgattctcaagatagacttagaaaatatattcaattaaacactgaacttcaggctaagctccaaaatga |
218 |
Q |
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| T |
56434445 |
ccctccaggatcaactcttgaaggaggttactgattctcaagatagacttagaaaatatattcaattaaacactgaacttcaggctaagctccaaaatga |
56434346 |
T |
|
| Q |
219 |
gacaaaccttcgcatacaagccgagtctcatgccgcttccacccaagagaaagcaacatctttagaagggaagctaggcaatctttcagataccatacag |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56434345 |
gacaaaccttcgcatacaagccgagtctcatgccacttccacccaagagaaagcaacatctttagaagggaagctaggcaatctttcagataccatacag |
56434246 |
T |
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| Q |
319 |
agggnnnnnnngagacttcacgatgatcattcacaactcaaaaaggactccaacttttctatttctagaatcactgctaatgtaagttgtcaatgttcag |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56434245 |
agggaaaaaaagagacttcacgatgatcattcacaactcaaaaaggactccaacttttctatttctagaatcaccgctaatgtaagttgtcaatgttcag |
56434146 |
T |
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| Q |
419 |
actaatgctcgttcatatctatcaatcattctttaacttgtatattttt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56434145 |
actaatgctcgttcatatctatcaatcattctttaacttgtatattttt |
56434097 |
T |
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