View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11493_low_9 (Length: 428)
Name: NF11493_low_9
Description: NF11493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11493_low_9 |
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| [»] scaffold0440 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 2251 - 1847
Alignment:
| Q |
13 |
ggcaggacatatatgtatttatttgaaagtattctagctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaaaactaattacta |
112 |
Q |
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| T |
2251 |
ggcaggacatatatgtatttatttgaaagtattctagctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaaaactaattacta |
2152 |
T |
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| Q |
113 |
atcaaacaattatgtaagaaagtataatagttcttacataattgttattattgacaaatttaatcttcagtaaactgacattaatatggattggtctcaa |
212 |
Q |
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| T |
2151 |
atcaaacaattatgtaagaaagtataatagttcttacataattgttattattgacaaatttaatcttc-gtaaactgacattaatatggattggtctcaa |
2053 |
T |
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| Q |
213 |
atgtggactgcatgttaggacctcagcttgggacaagtttgc------atatatatcaatgacaaatggaatgtgattcataacgtgactataataaaat |
306 |
Q |
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| T |
2052 |
atgtggactgcatgttaggacctcagcttgggacaagtttgcatatatatatatatcaatgacaaatggaatgtgattcataacgtgactataataaaat |
1953 |
T |
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| Q |
307 |
tgtataagaagtaggatttgttctaatgtgagctgacttttaattttagtaaactacagggtaagtataatccaaagcaaggaagacctgaaccatataa |
406 |
Q |
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| T |
1952 |
tgtataagaagtaggatttgttctaatgtgagctgacttttaattttagtaaactacagggtaagtataatccaaagcaaggaagacctgaaccatataa |
1853 |
T |
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| Q |
407 |
cttgtg |
412 |
Q |
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|||||| |
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| T |
1852 |
cttgtg |
1847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 89 - 287
Target Start/End: Complemental strand, 21136048 - 21135852
Alignment:
| Q |
89 |
agtcaatgcaaaaactaattactaatcaaacaattatgtaagaaagtataatagttct---tacataattgttattattgacaaatttaatcttcagtaa |
185 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| || |||| |
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| T |
21136048 |
agtcaatccaagaactaattactaatcaaacaattatgtaagaaagtgtcatagttctaattacataattgttattattgacaaatttaatcctctgtaa |
21135949 |
T |
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| Q |
186 |
actgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaagtttgcatatatatcaatgacaaatggaatgtgattc |
285 |
Q |
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| T |
21135948 |
actgacattaatttggattggtctcaaaagtggactg-ttaggaggacctcaggttgggacaagtttgcatata----aatggcaaattgaatgtgattc |
21135854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 358
Target Start/End: Complemental strand, 21308466 - 21308277
Alignment:
| Q |
161 |
tattgacaaatttaatcttcagtaaactgacattaatatggattggtctcaaatgtggactgcatgttaggacctcagcttgggacaagtttgcatatat |
260 |
Q |
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| T |
21308466 |
tattgacaaatttaatcctcagtgaactaacattaatatggattggtctcaaaattggac----tgttagaacttcaggttgggacaagtttgc----ct |
21308375 |
T |
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| Q |
261 |
atcaatgacaaatggaatgtgattcataacgtgactataataaaattgtataagaagtaggatttgttctaatgtgagctgacttttaattttagtaa |
358 |
Q |
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| T |
21308374 |
atcaatggcaaatggaatgtgatttatgaggtgactataataaaattgtatacgaagtatgctttgttctaatgtgagctgaattttaatattagtaa |
21308277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 21110580 - 21110528
Alignment:
| Q |
24 |
tatgtatttatttgaaagtattctagctaaaattaggatctaataagaaagaa |
76 |
Q |
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| T |
21110580 |
tatgaatttatttgaaagtatcatagttacaattaggatctaataagaaagaa |
21110528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 21146415 - 21146357
Alignment:
| Q |
225 |
tgttaggacctcagcttgggacaagtttgcatatatatcaatgacaaatggaatgtgattcat |
287 |
Q |
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| T |
21146415 |
tgttagaacctctggttgggacaagtttg----tatatcaatggcaaatggaatgtgattcat |
21146357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 17752 - 17883
Alignment:
| Q |
29 |
atttatttgaaagtattctagctaaaattaggatctaataagaaagaaataccgcgcacaagtcaatgcaaa-aactaattactaatcaaacaattatgt |
127 |
Q |
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| T |
17752 |
atttatttgaaggtgtcatagttacaattaggatctaataagaaagaactattgc--acaatacaatgcttagaactaattactaggcaaacaattatgt |
17849 |
T |
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| Q |
128 |
aagaaagtataatagttc---ttacataattgtt |
158 |
Q |
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| T |
17850 |
aagaaagtatcttagttctaattacataattgtt |
17883 |
T |
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