View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_high_15 (Length: 308)

Name: NF11494_high_15
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_high_15
NF11494_high_15
[»] chr4 (1 HSPs)
chr4 (16-307)||(23615151-23615438)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 23615438 - 23615151
Alignment:
Q  16 gagcagataggctcagatatatgaatatgaagttgaaattgaaacttgaaaattgaaattaagttgaaacgtctagagctatagctagggctctatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23615438 gagcagataggctcagatatatgaatatgaagttgaaattgaaacttgaaaattgaaattaagttgaaacgtctagagctatagctagggctctatattt 23615339  T
Q  116 ttctcagtcttgatggaggtgactgtgaactccaaggtttcatagtggacattacatggatcatcatagattgtttggcactgtgtgtttaatgttcaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23615338 ttctcagtcttgatggaggtgactgtgaactccaaggtttcatagtggacattacatggatcatcatagattgtttggcactgtgtgtttaatgttcaag 23615239  T
Q  216 gatttattgtctgctagatagataagaggaccaaacattcatgttcattttgttaaatggtccaaattcatctacattcttcttctctctcg 307  Q
     |||||||||||||||    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||    
T  23615238 tatttattgtctgcta----gataagaggaccaaacattcatattcattttgttaaatggtccaaattcatctacattctttttttctctcg 23615151  T

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