View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_high_22 (Length: 274)

Name: NF11494_high_22
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_high_22
NF11494_high_22
[»] chr6 (29 HSPs)
chr6 (81-265)||(5155942-5156129)
chr6 (81-266)||(2939093-2939281)
chr6 (117-265)||(5372276-5372427)
chr6 (81-206)||(2657079-2657208)
chr6 (156-264)||(5398226-5398337)
chr6 (174-265)||(5334364-5334455)
chr6 (145-265)||(5351579-5351702)
chr6 (174-265)||(5180799-5180890)
chr6 (174-255)||(5256139-5256220)
chr6 (36-265)||(5352751-5352979)
chr6 (186-259)||(5448794-5448867)
chr6 (146-265)||(5177918-5178040)
chr6 (146-265)||(5279743-5279865)
chr6 (146-265)||(5688897-5689019)
chr6 (181-265)||(5439190-5439274)
chr6 (145-251)||(5100811-5100920)
chr6 (145-251)||(5135912-5136021)
chr6 (17-71)||(5398373-5398427)
chr6 (146-258)||(5242506-5242621)
chr6 (17-65)||(5100762-5100810)
chr6 (90-265)||(5427079-5427257)
chr6 (192-253)||(5098402-5098463)
chr6 (17-65)||(5135863-5135911)
chr6 (174-265)||(5346208-5346299)
chr6 (17-71)||(5242380-5242434)
chr6 (174-255)||(5283249-5283330)
chr6 (32-65)||(5351703-5351736)
chr6 (18-71)||(5439350-5439403)
chr6 (148-232)||(23127306-23127393)
[»] chr3 (4 HSPs)
chr3 (175-265)||(47985419-47985509)
chr3 (175-265)||(48003993-48004083)
chr3 (175-265)||(47994706-47994796)
chr3 (175-265)||(48013278-48013368)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 5155942 - 5156129
Alignment:
Q  81 tcatcattactacaagaaattgcattcaaacctggtacatgatacagctccaatgttttcaaaaatggttcatcgtatacaagataaa---ttgttttct 177  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||   |||| ||||    
T  5155942 tcatcattactacaagaaattgcattcaaatcttgtacatgatacagctccattgtatttgaaactggttcatcgtatacaagataaactgttgtcttct 5156041  T
Q  178 tcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||||||| |||| | ||||||||||||||  |||||||||||||||||| ||||| | | ||||| ||||||||||||||||||||||    
T  5156042 tcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatc 5156129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 2939281 - 2939093
Alignment:
Q  81 tcatcattactacaagaaattgcattcaaacctggtacatgatacagctccaatgttttcaaaaatggttcatcgtatacaagataaattgtt---ttct 177  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||| ||||| |||| |  ||| ||||||||| ||||| ||||||||||||   ||||    
T  2939281 tcatcgttactacaagaaattgcattcaaatctggaacatgatacaactccattgttctggaaactggttcatcatatacgagataaattgttgccttct 2939182  T
Q  178 tcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatcc 266  Q
    |||||||  |||||||||||| |||||||  |||||||||||||||||| ||||  | | ||||| ||||||||||||| |||||||||    
T  2939181 tcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactaccctctgcccttcttcatcc 2939093  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 117 - 265
Target Start/End: Complemental strand, 5372427 - 5372276
Alignment:
Q  117 acatgatacagctccaatgttttcaaaaatggttcatcgtatacaagataaattgtt---ttcttcacaataaaatcattctcgaaaacaaaaacgacct 213  Q
    |||||||||| ||||| ||||||  ||| ||||||||||||||| ||||||||||||   ||||||||||| ||||||||||||| |||||||  || ||    
T  5372427 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatct 5372328  T
Q  214 ccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||||||||||||| ||||| | | ||||| ||||||||||||||||||||||    
T  5372327 ccactttgttaccaggttctagacttgatactaccctctgcccctcttcatc 5372276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 2657079 - 2657208
Alignment:
Q  81 tcatcattactacaagaaattgcattcaaacctgg-tacatgatacagctccaatgttttcaaaaatggttcatcgtatacaagataaattgtt---ttc 176  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||| ||||| ||||||| ||| ||||| || |||||| ||||||||||||   |||    
T  2657079 tcatcattactacaagaaattgcattcaaatctggaaacatgatacaactccattgttttcgaaactggttaattgtatacgagataaattgttgccttc 2657178  T
Q  177 ttcacaataaaatcattctcgaaaacaaaa 206  Q
    |||||||| |||||||||||||| ||||||    
T  2657179 ttcacaatgaaatcattctcgaatacaaaa 2657208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 5398337 - 5398226
Alignment:
Q  156 tatacaagataaattgtt---ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctct 252  Q
    ||||||||||||| ||||   ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| ||| ||||| ||||||| |    
T  5398337 tatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacccttt 5398238  T
Q  253 gcccctcttcat 264  Q
    ||||||||||||    
T  5398237 gcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 5334455 - 5334364
Alignment:
Q  174 ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |  |||| ||||||||| ||||||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatc 5334364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 5351702 - 5351579
Alignment:
Q  145 atggttcatcgtatacaagataaatt---gttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttga 241  Q
    |||||||||| ||||| ||||||| |   || || ||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||    
T  5351702 atggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttga 5351603  T
Q  242 tcctaccctctgcccctcttcatc 265  Q
    | ||| |||||||||||| |||||    
T  5351602 tactaacctctgcccctcctcatc 5351579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 5180799 - 5180890
Alignment:
Q  174 ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||||||||||| |||   ||||| ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||| |||||||||||    
T  5180799 ttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatc 5180890  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 5256139 - 5256220
Alignment:
Q  174 ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcc 255  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||| ||| |||||  |||||||||||    
T  5256139 ttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattaccctctgcc 5256220  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 5352751 - 5352979
Alignment:
Q  36 gctcctcttcaatagagaatctcttgacagggcgttgaaatattgtcatcattactacaagaaattgcattcaaacctggtacatgatacagctccaatg 135  Q
    |||||||||||||||||||||||||||||||| | | |    || ||||||| |||| ||| ||   |||||||| |||||| |||||| |  ||||| |    
T  5352751 gctcctcttcaatagagaatctcttgacagggtgctca----ttttcatcatcactagaagcaaggacattcaaatctggtaaatgatataaatccaaag 5352846  T
Q  136 ttttcaaaaatggttcatcgtatacaagataaattgtt---ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttc 232  Q
    | ||   || ||||| ||| ||||| ||||||||||||   |||||||| || |||  |||||||||||||| ||| ||||| ||||||| ||| || ||    
T  5352847 tctttccaattggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatc 5352946  T
Q  233 catatttgatcctaccctctgcccctcttcatc 265  Q
    |||| ||||| |||| ||||||||||| |||||    
T  5352947 catacttgatactactctctgcccctcctcatc 5352979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 5448867 - 5448794
Alignment:
Q  186 aaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctc 259  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||| ||| ||||||||||||    
T  5448867 aaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaacctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 5178040 - 5177918
Alignment:
Q  146 tggttcatcgtatacaagataaa---ttgttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgat 242  Q
    ||||||||| ||||| |||||||   |||||||||||||||| ||| | ||||| ||||||| ||| ||||||||||||||||  ||||| ||| |||||    
T  5178040 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgat 5177941  T
Q  243 cctaccctctgcccctcttcatc 265  Q
     |||| ||||| |||||||||||    
T  5177940 actactctctgaccctcttcatc 5177918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 5279865 - 5279743
Alignment:
Q  146 tggttcatcgtatacaagataaa---ttgttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgat 242  Q
    ||||||||| ||||| |||||||   |||||||||||||||| ||| | ||||| ||||||| ||| ||||||||||||||||  ||||| ||| |||||    
T  5279865 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgat 5279766  T
Q  243 cctaccctctgcccctcttcatc 265  Q
     |||| ||||| |||||||||||    
T  5279765 actactctctgaccctcttcatc 5279743  T

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Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 5688897 - 5689019
Alignment:
Q  146 tggttcatcgtatacaagataaa---ttgttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgat 242  Q
    ||||||||| ||||| |||||||   |||||||||||||||| ||| | ||||| |||||| |||| ||||||||||||||||  ||||| ||| |||||    
T  5688897 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 5688996  T
Q  243 cctaccctctgcccctcttcatc 265  Q
     |||| ||||| |||||||||||    
T  5688997 actactctctgtccctcttcatc 5689019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 5439274 - 5439190
Alignment:
Q  181 caataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||| ||||| ||| |||||  || |||||||||||| |||||    
T  5439274 caatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaacctctgcccctcctcatc 5439190  T

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Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 5100811 - 5100920
Alignment:
Q  145 atggttcatcgtatacaagataaattgttttctt---cacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttga 241  Q
    |||||||||||||||| ||||||| || | ||||   |||||| |||   ||||| ||||||| ||||||||||||||||||||||||||| ||| ||||    
T  5100811 atggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttga 5100910  T
Q  242 tcctaccctc 251  Q
    | ||||||||    
T  5100911 tactaccctc 5100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 5135912 - 5136021
Alignment:
Q  145 atggttcatcgtatacaagataaattgttttctt---cacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttga 241  Q
    |||||||||||||||| ||||||| || | ||||   |||||| |||   ||||| ||||||| ||||||||||||||||||||||||||| ||| ||||    
T  5135912 atggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttga 5136011  T
Q  242 tcctaccctc 251  Q
    | ||||||||    
T  5136012 tactaccctc 5136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 5398427 - 5398373
Alignment:
Q  17 tgattgaagtcattggtgggctcctcttcaatagagaatctcttgacagggcgtt 71  Q
    |||||||||||||  |||||||| |||||| ||||||||||||||||||||||||    
T  5398427 tgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacagggcgtt 5398373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 5242506 - 5242621
Alignment:
Q  146 tggttcatcgtatacaagataaatt---gttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgat 242  Q
    ||||||||| ||||| ||||||| |   || ||||||||||| |||   ||||| ||||||||||||||||||||||||||||| ||||| ||| || ||    
T  5242506 tggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcat 5242605  T
Q  243 cctaccctctgcccct 258  Q
     |||| ||| ||||||    
T  5242606 actactctcagcccct 5242621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 5100762 - 5100810
Alignment:
Q  17 tgattgaagtcattggtgggctcctcttcaatagagaatctcttgacag 65  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  5100762 tgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 5100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 5427257 - 5427079
Alignment:
Q  90 ctacaagaaattgcattcaaacctggtacatgatacagctccaatgttttcaaaaatggttcatcgtatacaagataaatt---gttttcttcacaataa 186  Q
    ||||||| |||  |||||||| ||||||||||||| | ||||| | ||||   || ||||||||| ||||| ||||||| |   || ||| ||||||  |    
T  5427257 ctacaagtaatgtcattcaaatctggtacatgatataactccatttttttgccaattggttcatcatatacgagataaactactgtcttcgtcacaacga 5427158  T
Q  187 aatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||   ||||| ||||||||||||||||||| ||||||||| ||||| ||| ||||| |||| || | |||||| |||||    
T  5427157 aactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactactctttccccctcctcatc 5427079  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 5098463 - 5098402
Alignment:
Q  192 ttctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctg 253  Q
    ||||||||||||| || |||||||||||||||||| ||||| ||| |||||  |||||||||    
T  5098463 ttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattaccctctg 5098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 5135863 - 5135911
Alignment:
Q  17 tgattgaagtcattggtgggctcctcttcaatagagaatctcttgacag 65  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||    
T  5135863 tgattgaagtcatcattgggctcctcttcagtagagaatctcttgacag 5135911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 5346299 - 5346208
Alignment:
Q  174 ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    ||||||||||| ||| ||||||| | |||||  || ||||||||||||||||| ||||| ||| ||||| | || ||||| ||||| |||||    
T  5346299 ttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaactctctggccctcctcatc 5346208  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 5242380 - 5242434
Alignment:
Q  17 tgattgaagtcattggtgggctcctcttcaatagagaatctcttgacagggcgtt 71  Q
    |||||||||||||  |  |||||||||||| |||||||||||||||||| |||||    
T  5242380 tgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacagagcgtt 5242434  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 5283249 - 5283330
Alignment:
Q  174 ttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcc 255  Q
    ||||||||||| |||   || || |||||||| | |||||||||||||||||| ||||| ||| |||||  |||||||||||    
T  5283249 ttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattaccctctgcc 5283330  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 5351736 - 5351703
Alignment:
Q  32 gtgggctcctcttcaatagagaatctcttgacag 65  Q
    ||||||||||||||| ||||||||||||||||||    
T  5351736 gtgggctcctcttcagtagagaatctcttgacag 5351703  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5439403 - 5439350
Alignment:
Q  18 gattgaagtcattggtgggctcctcttcaatagagaatctcttgacagggcgtt 71  Q
    ||||||||||||  |||||||||||| || |||||||||||||  |||||||||    
T  5439403 gattgaagtcatcagtgggctcctctccagtagagaatctcttagcagggcgtt 5439350  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 23127306 - 23127393
Alignment:
Q  148 gttcatcgtatacaagataaa---ttgttttcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttc 232  Q
    ||||||| |||||||||||||   |||| ||||||||||  ||| ||||||| ||||| | ||| ||||||| ||||||||| |||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttc 23127393  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 47985419 - 47985509
Alignment:
Q  175 tcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    |||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||| ||| ||||| |||| |||| |||||| |||||    
T  47985419 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatc 47985509  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 48003993 - 48004083
Alignment:
Q  175 tcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    |||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||| ||| ||||| |||| |||| |||||| |||||    
T  48003993 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatc 48004083  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 47994706 - 47994796
Alignment:
Q  175 tcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    |||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||| ||| ||| ||||| |||| |||| |||||| |||||    
T  47994706 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctctccccctcctcatc 47994796  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 48013278 - 48013368
Alignment:
Q  175 tcttcacaataaaatcattctcgaaaacaaaaacgacctccactttgttaccgggttccatatttgatcctaccctctgcccctcttcatc 265  Q
    |||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||| ||| ||| ||||| |||| |||| |||||| |||||    
T  48013278 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctctccccctcctcatc 48013368  T

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