View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_high_4 (Length: 516)

Name: NF11494_high_4
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_high_4
NF11494_high_4
[»] chr4 (21 HSPs)
chr4 (257-494)||(4622952-4623182)
chr4 (346-489)||(4598518-4598661)
chr4 (107-184)||(4622798-4622875)
chr4 (346-492)||(25015751-25015897)
chr4 (346-492)||(25037031-25037177)
chr4 (106-184)||(4634232-4634311)
chr4 (106-184)||(9661802-9661881)
chr4 (106-170)||(1657656-1657721)
chr4 (106-170)||(16991835-16991900)
chr4 (106-177)||(11817028-11817100)
chr4 (107-146)||(44021652-44021691)
chr4 (105-148)||(46729004-46729047)
chr4 (106-148)||(41486561-41486603)
chr4 (109-165)||(14542601-14542658)
chr4 (106-170)||(28588524-28588589)
chr4 (108-170)||(54420800-54420863)
chr4 (106-148)||(3673609-3673651)
chr4 (109-142)||(4959664-4959697)
chr4 (106-177)||(3168996-3169068)
chr4 (105-145)||(18935648-18935688)
chr4 (106-184)||(43156725-43156805)
[»] chr2 (26 HSPs)
chr2 (346-492)||(18805814-18805960)
chr2 (106-184)||(3390381-3390460)
chr2 (106-184)||(25771394-25771473)
chr2 (106-167)||(6089859-6089921)
chr2 (106-184)||(27024225-27024304)
chr2 (106-184)||(40125338-40125417)
chr2 (107-176)||(3464916-3464986)
chr2 (107-177)||(25237413-25237484)
chr2 (119-176)||(31263053-31263111)
chr2 (106-148)||(37883639-37883681)
chr2 (106-170)||(10589001-10589066)
chr2 (108-149)||(15674062-15674103)
chr2 (106-170)||(25516457-25516522)
chr2 (106-170)||(41176825-41176890)
chr2 (106-170)||(44167795-44167860)
chr2 (106-145)||(7640442-7640481)
chr2 (106-149)||(16880045-16880088)
chr2 (106-148)||(26491289-26491331)
chr2 (105-170)||(43566840-43566905)
chr2 (106-170)||(3602948-3603013)
chr2 (109-142)||(9715634-9715667)
chr2 (108-149)||(17037737-17037778)
chr2 (106-170)||(25623131-25623196)
chr2 (106-170)||(27191421-27191486)
chr2 (106-170)||(27841235-27841300)
chr2 (107-148)||(42105839-42105880)
[»] chr5 (15 HSPs)
chr5 (106-184)||(31645778-31645857)
chr5 (106-184)||(6887264-6887343)
chr5 (106-170)||(34894002-34894067)
chr5 (106-184)||(33486656-33486735)
chr5 (106-170)||(28618567-28618632)
chr5 (106-147)||(29310435-29310476)
chr5 (106-148)||(41554472-41554514)
chr5 (110-178)||(41988139-41988208)
chr5 (404-488)||(30363051-30363135)
chr5 (106-148)||(19646127-19646169)
chr5 (104-141)||(2415393-2415430)
chr5 (106-178)||(41357993-41358066)
chr5 (106-177)||(8812238-8812310)
chr5 (106-178)||(15710495-15710570)
chr5 (108-148)||(37424979-37425019)
[»] chr1 (13 HSPs)
chr1 (109-184)||(27469821-27469897)
chr1 (106-184)||(22344998-22345077)
chr1 (104-178)||(52839378-52839453)
chr1 (108-170)||(6212974-6213037)
chr1 (119-184)||(14717341-14717407)
chr1 (107-149)||(44514077-44514119)
chr1 (106-170)||(30853869-30853934)
chr1 (106-178)||(38646539-38646612)
chr1 (106-176)||(13691844-13691916)
chr1 (104-148)||(52839507-52839551)
chr1 (106-147)||(5832220-5832261)
chr1 (106-170)||(33703595-33703660)
chr1 (106-142)||(44562835-44562871)
[»] chr7 (17 HSPs)
chr7 (106-184)||(40775216-40775295)
chr7 (106-149)||(28015341-28015384)
chr7 (108-175)||(41748589-41748657)
chr7 (106-148)||(24045318-24045360)
chr7 (106-148)||(47749720-47749762)
chr7 (107-148)||(16263373-16263414)
chr7 (106-170)||(24470358-24470423)
chr7 (106-170)||(24475306-24475371)
chr7 (109-142)||(47156388-47156421)
chr7 (108-148)||(23732481-23732521)
chr7 (106-145)||(30992909-30992948)
chr7 (106-167)||(38649444-38649506)
chr7 (121-177)||(23177683-23177740)
chr7 (109-142)||(25855309-25855342)
chr7 (109-170)||(43483558-43483619)
chr7 (106-170)||(49166890-49166955)
chr7 (104-148)||(35141837-35141881)
[»] chr3 (14 HSPs)
chr3 (106-184)||(1165482-1165561)
chr3 (106-170)||(20201144-20201209)
chr3 (106-170)||(20203326-20203391)
chr3 (106-184)||(22844000-22844079)
chr3 (106-184)||(42106060-42106139)
chr3 (106-184)||(43029632-43029711)
chr3 (106-167)||(50460160-50460222)
chr3 (106-178)||(1220301-1220374)
chr3 (106-170)||(41882494-41882559)
chr3 (106-170)||(50519753-50519818)
chr3 (106-184)||(913404-913483)
chr3 (106-164)||(1806546-1806605)
chr3 (105-170)||(43839602-43839667)
chr3 (106-170)||(22286835-22286900)
[»] chr8 (13 HSPs)
chr8 (106-170)||(31874047-31874112)
chr8 (106-177)||(9269977-9270049)
chr8 (107-170)||(13864322-13864386)
chr8 (109-184)||(16937428-16937504)
chr8 (106-177)||(23766698-23766770)
chr8 (106-148)||(10042747-10042789)
chr8 (109-165)||(44295284-44295341)
chr8 (106-184)||(15665488-15665567)
chr8 (106-167)||(9992631-9992693)
chr8 (110-148)||(27534489-27534527)
chr8 (106-148)||(37658952-37658994)
chr8 (106-170)||(36545867-36545932)
chr8 (122-166)||(39067816-39067860)
[»] chr6 (9 HSPs)
chr6 (106-178)||(32457601-32457674)
chr6 (106-184)||(16913277-16913356)
chr6 (106-145)||(19759777-19759816)
chr6 (108-170)||(33194568-33194631)
chr6 (106-148)||(12576564-12576606)
chr6 (106-147)||(32804281-32804322)
chr6 (109-169)||(34020582-34020643)
chr6 (106-146)||(548951-548991)
chr6 (106-184)||(20844956-20845036)
[»] scaffold0045 (1 HSPs)
scaffold0045 (108-170)||(9736-9799)
[»] scaffold1294 (1 HSPs)
scaffold1294 (109-184)||(729-805)
[»] scaffold0012 (1 HSPs)
scaffold0012 (121-184)||(244583-244647)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 257 - 494
Target Start/End: Original strand, 4622952 - 4623182
Alignment:
Q  257 ttcaagattaatgaccaagctcacacagtattattggtggtcatgatgacatatgatgacatgcatcaaccaataattctgttatgttgaagaaacttcc 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||||||||||    
T  4622952 ttcaagattaatgaccaagctcacacagtattattggtggtcatgatgacat----------gcatcaaccaataattctattatgttgaagaaacttcc 4623041  T
Q  357 taaaccaacgggcagagagcttagggtgtcttttaagat---cattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattc 453  Q
    ||||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623042 taaaccaccgggcagagagcttagggtgtcttgtaagatgaccattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattc 4623141  T
Q  454 aaagttgtccaaaagggaccatgcaaaatatccttgtacct 494  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4623142 aaagttgtccaaaagggaccatgcaaaatatccttgtacct 4623182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 346 - 489
Target Start/End: Original strand, 4598518 - 4598661
Alignment:
Q  346 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtca 445  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4598518 aagaaatttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacggtgtatccgtca 4598617  T
Q  446 ttccattcaaagttgtccaaaagggaccatgcaaaatatccttg 489  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  4598618 ctccattcaaagttgtccaaaagggaccatgcaaaatatccttg 4598661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 4622798 - 4622875
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4622798 ggtgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaactagagttttggtgacg 4622875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 25015751 - 25015897
Alignment:
Q  346 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtca 445  Q
    |||||| |||||||||||| |||||||||||||  ||||||||||||||| ||  |  |||| |||| |||| |||||||||||   |||||||||  |     
T  25015751 aagaaagttcctaaaccaatgggcagagagcttttggtgtcttttaagattatcattgtaattaacatagttcattccaaaacgtctagtgtatccagcc 25015850  T
Q  446 ttccattcaaagttgtccaaaagggaccatgcaaaatatccttgtac 492  Q
      ||||||||||||||||||||| |||||||||||||||||||||||    
T  25015851 agccattcaaagttgtccaaaagtgaccatgcaaaatatccttgtac 25015897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 25037031 - 25037177
Alignment:
Q  346 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtca 445  Q
    |||||| |||||||||||| ||||||| |||||  ||||||||||||||| ||  |  ||||| ||||||||||||||||||||     |||||||| |     
T  25037031 aagaaaattcctaaaccaatgggcagaaagcttttggtgtcttttaagattatctttgtaatctacaaagttaattccaaaacgtcttctgtatccggcc 25037130  T
Q  446 ttccattcaaagttgtccaaaagggaccatgcaaaatatccttgtac 492  Q
      ||||||||||||||| ||||| |||||||||||||||||||||||    
T  25037131 agccattcaaagttgtctaaaagtgaccatgcaaaatatccttgtac 25037177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 4634311 - 4634232
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  4634311 gggtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 4634232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 9661881 - 9661802
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  9661881 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 9661802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 1657656 - 1657721
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  1657656 gggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaacta 1657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 16991900 - 16991835
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  16991900 gggtgattttgggtcaaaaattgaccctaaatcaccgctctttgatggatgaaggagaagaaacta 16991835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 11817100 - 11817028
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||| |||||| || ||| |||| ||||||||||| || |||||||||||||||| |||||||||    
T  11817100 gggtgattttgggtcaaaacttaaccctaaaccacccctctttgatggatgaagaagaagaaattaaagtttt 11817028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 44021652 - 44021691
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctct 146  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  44021652 ggtgattttggatcaaaaattgaccttaaaccacccctct 44021691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 46729004 - 46729047
Alignment:
Q  105 agggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  46729004 agggtgattttgggtcaaaaattgaccctaaatcacccctcttt 46729047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 41486603 - 41486561
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  41486603 gggtgattttggatcaaaaattgaccctaaataacccctcttt 41486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 14542601 - 14542658
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaaga 165  Q
    ||||||||| ||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  14542601 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaaga 14542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 28588589 - 28588524
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctct-ttattgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| |||||||||| ||| | || ||||||| |||||||||||    
T  28588589 gggtgattttgggtcaaaaattgaccctaaatcacccttctatgatggatgaaggagaagaaacta 28588524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 54420800 - 54420863
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||| ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  54420800 gtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 54420863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 3673651 - 3673609
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||||||| || ||||||||||||| ||||||||||||||||    
T  3673651 gggtgatttggggtcaaaaattgaccctaaatcacccctcttt 3673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 4959664 - 4959697
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcaccc 142  Q
    ||||||||||||||||||||||| ||||||||||    
T  4959664 tgattttggatcaaaaattgaccctaaatcaccc 4959697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 3169068 - 3168996
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagtttt 177  Q
    |||||||||||| |||| |||||||  ||||||||| ||||||  || ||||||||||| |||||| ||||||    
T  3169068 gggtgattttgggtcaataattgactctaaatcacctctctttggtgaatgaagaagaaaaaactagagtttt 3168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 18935688 - 18935648
Alignment:
Q  105 agggtgattttggatcaaaaattgaccttaaatcacccctc 145  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  18935688 agggtgattctaggtcaaaaattgaccttaaatcacccctc 18935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 43156805 - 43156725
Alignment:
Q  106 gggtgattttggatcaaaaattga-ccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||| || ||||||||||||||||  | ||||||| ||||||||   |||||||| |||||    
T  43156805 gggtgattttgggtcaaaaattgacccgtaaatcacccctctttggtggatgaaggagaagaaaactaagttttggtgacg 43156725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 18805960 - 18805814
Alignment:
Q  346 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtca 445  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |   ||||||||||||||||||||||||| |  |||||||||||     
T  18805960 aagaaacttcctaaaccaacgggcagagagcttagggtatcttttaagattatttttgaaatcaacaaagttaattccaaaacgtaaggtgtatccgtct 18805861  T
Q  446 ttccattcaaagttgtccaaaagggaccatgcaaaatatccttgtac 492  Q
    | ||||||||| ||||| |||||||||||||||||||||||||||||    
T  18805860 tgccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtac 18805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 3390460 - 3390381
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  3390460 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 3390381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 25771473 - 25771394
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  25771473 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 25771394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 6089921 - 6089859
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaa 167  Q
    |||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  6089921 gggtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaa 6089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 27024225 - 27024304
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||| || ||||||| ||||||||||| ||||||| |||||    
T  27024225 gggtgattttgggtcaaaaaatgaccctaaatcacccatctttgatggatgaaggagaagaaactagagttttggtgacg 27024304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 40125417 - 40125338
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||  | ||||||| |||||||||||| |||||| |||||    
T  40125417 gggtgattttgggtcaaaaattaaccctaaatcacccctctttggtggatgaaggagaagaaactaaggttttgatgacg 40125338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 3464986 - 3464916
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttt 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||  | ||||||| |||||||| || |||||    
T  3464986 ggtgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaattagagttt 3464916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 25237413 - 25237484
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||||||||| |||||  |||||||||||||||| || ||||||| |||| |||||| ||||||    
T  25237413 ggtgattttggatcaaaagttgactctaaatcacccctctttaatagatgaaggagaataaactagagtttt 25237484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 31263053 - 31263111
Alignment:
Q  119 tcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttt 176  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||| ||||||||||||    
T  31263053 tcaaagattgaccctaaatcacccctctttgatggatgaagaagaaaaaactaaagttt 31263111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 37883681 - 37883639
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  37883681 gggtgattttggattaaaaattgaccctaaatcacccctcttt 37883639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 10589066 - 10589001
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| |||||||||||| |||  | |||||||| ||||||||||    
T  10589066 gggtgattttgggtcaaaaattgaccctaaatcacccctttttggtggatgaagatgaagaaacta 10589001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 15674062 - 15674103
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttta 149  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  15674062 gtgattttgggtcaaaaattgaccctaaatcacccctcttta 15674103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 25516522 - 25516457
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  25516522 gggtgattttgggtcaaatattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 25516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 41176890 - 41176825
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  41176890 gggtggttttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 41176825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 44167795 - 44167860
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| || |||||||||||||  | ||||||| |||||||||||    
T  44167795 gggtgattttgggtcaaaaattgaccatatatcacccctctttggtggatgaaggagaagaaacta 44167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 7640442 - 7640481
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctc 145  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  7640442 gggtgattttgggtcaaaaattgaccctaaatcacccctc 7640481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 16880045 - 16880088
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta 149  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  16880045 gggtgattttgggtcaaaaattgaccaaaaatcacccctcttta 16880088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 26491331 - 26491289
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  26491331 gggtgattttgggtcaaaaattgaacttaaattacccctcttt 26491289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 43566905 - 43566840
Alignment:
Q  105 agggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||  | ||||||| |||||||||||    
T  43566905 agggtgattttgggtcaaaaattgaccct-aatcacccctctttggtggatgaaggagaagaaacta 43566840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 3603013 - 3602948
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||  |||||| |||||| |||||||||| ||||| || ||||||| |||||||||||    
T  3603013 gggtgattttgagtcaaaagttgaccataaatcacccatctttgatggatgaaggagaagaaacta 3602948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 9715634 - 9715667
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcaccc 142  Q
    ||||||||||||||||||||||| ||||||||||    
T  9715634 tgattttggatcaaaaattgaccctaaatcaccc 9715667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 17037737 - 17037778
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttta 149  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  17037737 gtgattttgggtcaaaaattgaccaaaaatcacccctcttta 17037778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 25623131 - 25623196
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| |||||||||||   |||||||||||||||| ||  |||||||| |||||||||    
T  25623131 gggtgattttgggtcaaaaattgataataaatcacccctctttgatgtatgaagaaaaagaaacta 25623196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 27191421 - 27191486
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||||||| || ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  27191421 gggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 27191486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 27841235 - 27841300
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||||||| || ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  27841235 gggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 27841300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 42105839 - 42105880
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  42105839 ggtgattttgggtcaaaaattgaccctaaagcacccctcttt 42105880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 31645857 - 31645778
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  31645857 gggtgattttggatcaaaaattgaccctaaatcacccctctttaatggatgaaggagaagaaactagggttttggtgacg 31645778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 6887264 - 6887343
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| | ||||||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||    
T  6887264 gggtgattttgggttaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagagttttggtgacg 6887343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 34894002 - 34894067
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||    
T  34894002 gggtgattttgggtcaaaaattgaccgtaaatcacccctctttgatggatgaaggagaagaaacta 34894067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 33486656 - 33486735
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| | |||||||  ||||||| ||| |||||| |||||    
T  33486656 gggtgattttgggtcaaaaattgaccctaaatcacccctctttagtggatgaaggtgaagaaattaaggttttggtgacg 33486735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 28618632 - 28618567
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| | ||||||||||||||||||||||||||||   |||||||| |||||||||||    
T  28618632 gggtgattttgggttaaaaattgaccttaaatcacccctctttggctgatgaaggagaagaaacta 28618567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 29310435 - 29310476
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctt 147  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  29310435 gggtgattttggatcaaaaattgaccctaaatcacccctctt 29310476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 41554514 - 41554472
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  41554514 gggtgattttggatcaaaaattgatcctaaatcacccctcttt 41554472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 41988208 - 41988139
Alignment:
Q  110 gattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    ||||||| |||||||||||| | |||||||||||||||| || | ||||| ||||||||||| |||||||    
T  41988208 gattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaactagagttttg 41988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 30363135 - 30363051
Alignment:
Q  404 taatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaagggaccatgcaaaatatcctt 488  Q
    ||||| |||||||| |||||||| | ||| ||||| || |||  ||||||||| |||||||| || ||||| |||||||||||||    
T  30363135 taatctacaaagttcattccaaacctcactgtgtacccttcaccccattcaaaattgtccaatagcgaccacgcaaaatatcctt 30363051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 19646127 - 19646169
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| ||||| |||||||||||| |||||||||||    
T  19646127 gggtgattttgggtcaaacattgaccttaaaccacccctcttt 19646169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 2415430 - 2415393
Alignment:
Q  104 aagggtgattttggatcaaaaattgaccttaaatcacc 141  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  2415430 aagggtgattttgggtcaaaaattgaccctaaatcacc 2415393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 41358066 - 41357993
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    |||||||||||| ||||||||||||| |||||||||  ||||| ||  |||||| | ||||||||| |||||||    
T  41358066 gggtgattttgggtcaaaaattgaccctaaatcacctatctttgatctatgaaggaaaagaaactagagttttg 41357993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 8812238 - 8812310
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||| | ||||||||||| || ||||||||| |||  | |||||||| |||||||||| ||||||    
T  8812238 gggtgattttgggttaaaaattgaccctatatcacccctttttggtggatgaagatgaagaaactagagtttt 8812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 15710570 - 15710495
Alignment:
Q  106 gggtgattttggatcaaaaa--ttgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    |||||||||||||| |||||  |||||| |||||||||| ||||| || ||||||| | ||||||||| |||||||    
T  15710570 gggtgattttggataaaaaaaattgaccataaatcacccatctttgatggatgaaggaaaagaaactagagttttg 15710495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 37425019 - 37424979
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  37425019 gtgattttgggtcagaaattgaccataaatcacccctcttt 37424979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 27469821 - 27469897
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||||| || ||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||| |||||    
T  27469821 tgattttggttcgaaaattgaccttaaatcacccctctttaatggatgaagaagaagaaactagaattttggtgacg 27469897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 22344998 - 22345077
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||| | |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  22344998 gggtgattttgggtcaaaaattgaacctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 22345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 52839453 - 52839378
Alignment:
Q  104 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || ||||||  |||| |||||| |||||||    
T  52839453 aagggtgattttgggtcaaaaattgaccctaaatcacccctctttaatggatgaaagagaacaaactagagttttg 52839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 6212974 - 6213037
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||| ||||||||||||| |||||||||||||||| || || |||| |||||||||||    
T  6212974 gtgattttgggtcaaaaattgaccataaatcacccctctttgatggacgaaggagaagaaacta 6213037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 14717341 - 14717407
Alignment:
Q  119 tcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||||||||| ||||||||||||||||  | ||||||| ||||||||||| ||||||| |||||    
T  14717341 tcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagagttttggtgacg 14717407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 44514077 - 44514119
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttta 149  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  44514077 ggtgattttgggtcaaaaattgaccctaaatcacccctcttta 44514119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 30853869 - 30853934
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||||| |||||| |||||||  | ||||||| |||||||||||    
T  30853869 gggtgattttgggtcaaaaattgaccttgaatcacacctctttggtggatgaaggagaagaaacta 30853934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 38646612 - 38646539
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| || ||||||| |||| ||| || |||||||    
T  38646612 gggtgattttgggtcaaaaattgaccataaatcactcctctttgatagatgaaggagaaaaaattagagttttg 38646539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 13691844 - 13691916
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatca-cccctcttta-ttgatgaagaagaagaaactaaagttt 176  Q
    |||||||||||| ||||||||||||| |||| || |||||||||| | |||||||||||||||| ||| ||||    
T  13691844 gggtgattttgggtcaaaaattgaccctaaaccaccccctctttagtggatgaagaagaagaaattaaggttt 13691916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 52839551 - 52839507
Alignment:
Q  104 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||    
T  52839551 aagggtgattttgggtcaaaaattgatcataaatcacccctcttt 52839507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 5832261 - 5832220
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctt 147  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  5832261 gggtgatttagggtcaaaaattgaccctaaatcacccctctt 5832220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 33703595 - 33703660
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaacta 170  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||| | ||||||| |||| ||||||    
T  33703595 gggtgattttgggtaaaaaattgaccataaatcatccctctttagtggatgaaggagaaaaaacta 33703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 44562835 - 44562871
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcaccc 142  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  44562835 gggtgattttgggtcaaaaattgaccctaaatcaccc 44562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 40775295 - 40775216
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||| ||  |||||| |||||    
T  40775295 gggtgattttggatcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaattagggttttggtgacg 40775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 28015384 - 28015341
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta 149  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  28015384 gggtgattttggatcaaaaattgaccctaaatcacccctcttta 28015341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 41748589 - 41748657
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagtt 175  Q
    |||||||||||||||||||||||| ||||||||  ||||||| || ||||||| |||||||||| ||||    
T  41748589 gtgattttggatcaaaaattgaccgtaaatcacatctctttagtgaatgaagatgaagaaactagagtt 41748657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 24045318 - 24045360
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  24045318 gggtgattttgggtcaaaaattgaccttaaatcaccactcttt 24045360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 47749762 - 47749720
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  47749762 gggtgattttgggtcaaaaattgaccataaatcacccctcttt 47749720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 16263414 - 16263373
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  16263414 ggtgattttggatcaaaaattgatcctaaatcacccctcttt 16263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 24470423 - 24470358
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| |||||||||| || ||||||||||||||||  | ||||||| |||||||||||    
T  24470423 gggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaacta 24470358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 24475371 - 24475306
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| |||||||||| || ||||||||||||||||  | ||||||| |||||||||||    
T  24475371 gggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaacta 24475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 47156421 - 47156388
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcaccc 142  Q
    ||||||||||||||||||||||||||||||||||    
T  47156421 tgattttggatcaaaaattgaccttaaatcaccc 47156388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 23732481 - 23732521
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  23732481 gtgattttgagtcaaaaattgaccttaaatcacccctcttt 23732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 30992909 - 30992948
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctc 145  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  30992909 gggtgattttgggtcaaaaattaaccttaaatcacccctc 30992948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 38649444 - 38649506
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaa 167  Q
    |||||||||||| ||||||||||||  |||||||||||| |||| |||||||||  |||||||    
T  38649444 gggtgattttgggtcaaaaattgactctaaatcacccctttttagttgatgaaggtgaagaaa 38649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 23177683 - 23177740
Alignment:
Q  121 aaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||||||||||| | ||||| || ||||||| ||||||||||| ||||||    
T  23177683 aaaaattgaccttaaatcactcatctttaatggatgaaggagaagaaactagagtttt 23177740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 25855309 - 25855342
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcaccc 142  Q
    ||||||||||||||||||||||| ||||||||||    
T  25855309 tgattttggatcaaaaattgaccctaaatcaccc 25855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 43483619 - 43483558
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaacta 170  Q
    ||||||| ||||||||||||||| |||||||| ||||||  | |||||||| | ||||||||    
T  43483619 tgattttagatcaaaaattgaccctaaatcactcctcttagtggatgaagatgcagaaacta 43483558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 49166955 - 49166890
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||| | ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  49166955 gggtgattttaggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 49166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 35141837 - 35141881
Alignment:
Q  104 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| | ||||||||||||| |||||||||| |||||    
T  35141837 aagggtgatttttggtcaaaaattgaccctaaatcacccttcttt 35141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 1165482 - 1165561
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  1165482 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 1165561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 20201144 - 20201209
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  20201144 gggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 20201209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 20203326 - 20203391
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  20203326 gggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 20203391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 22844079 - 22844000
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||  |||||| |||| ||||||  |||||| |||||    
T  22844079 gggtgattttgggtcaaaaattgaccttaaatcagccctctttgatgaatgaaggagaataaactagggttttggtgacg 22844000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 42106139 - 42106060
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||| | ||||||||||||| ||||||||||||||||  | |||||||| ||||||||||  |||||| |||||    
T  42106139 gggtgattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaagatgaagaaactagggttttggtgacg 42106060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 43029711 - 43029632
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||| ||| | |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  43029711 gggtgattttgggtcaaaaaatgatcctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 43029632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 50460222 - 50460160
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaa 167  Q
    ||||||||||   ||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  50460222 gggtgattttatgtcaaaaattgaccttaaatcatccctctttgatggatgaagaagaagaaa 50460160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 1220301 - 1220374
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 178  Q
    ||||||||||| |||||||||||| | |||||||||||||||| || | ||||| |||||||| || |||||||    
T  1220301 gggtgattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaattagagttttg 1220374  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 41882494 - 41882559
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||| ||||||| ||||||||||||| |||||||| ||||||| || ||||||| |||||||||||    
T  41882494 gggtaattttgggtcaaaaattgaccctaaatcactcctctttgatggatgaaggagaagaaacta 41882559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 50519818 - 50519753
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  50519818 gggtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 50519753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 913404 - 913483
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||  | ||| ||||||||||  | |||||||| ||||||||||| |||||| |||||    
T  913404 gggtgattttgggtcaaaaattgactatgaattacccctctttggtggatgaagatgaagaaactaaggttttggtgacg 913483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 1806546 - 1806605
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaag 164  Q
    ||||||||| |||||||||||||||| |||| |||||||||||  | |||||||||||||    
T  1806546 gggtgatttgggatcaaaaattgaccctaaaccacccctctttggtggatgaagaagaag 1806605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 43839602 - 43839667
Alignment:
Q  105 agggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaacta 170  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||||| || |||||| |||||||||||    
T  43839602 agggtgactttgg-tcaaaaattgaccctaaatcacccatctttagtgaatgaaggagaagaaacta 43839667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 22286835 - 22286900
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  22286835 gggtaattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 22286900  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 31874112 - 31874047
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  31874112 gggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaacta 31874047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 9270049 - 9269977
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||| ||||||||||| | ||||||||||||||||  | ||||||| ||||||||||| ||||||    
T  9270049 gggtgattttgggtcaaaaattgatcataaatcacccctctttggtggatgaaggagaagaaactagagtttt 9269977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 13864386 - 13864322
Alignment:
Q  107 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||||||||| |||||| ||||||||||||||||||||||| ||  |||||| |||||||||||    
T  13864386 ggtgattttggctcaaaagttgaccttaaatcacccctctttgataaatgaaggagaagaaacta 13864322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 16937428 - 16937504
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |||||||  ||||||||||  |||||| |||||    
T  16937428 tgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggtgaagaaactagggttttgatgacg 16937504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 23766770 - 23766698
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 177  Q
    |||||||||||| ||||||||||||||||||||||  ||||||  | ||||||| ||||||||||| ||||||    
T  23766770 gggtgattttgggtcaaaaattgaccttaaatcacatctctttggtggatgaagtagaagaaactagagtttt 23766698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 10042789 - 10042747
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  10042789 gggtgattttgggtcaaaaattgaccataaatcacccctcttt 10042747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 44295341 - 44295284
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaaga 165  Q
    ||||||||| ||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  44295341 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaaga 44295284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 15665567 - 15665488
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctttatt-gatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||  |||||| |||||| |||||||||||||||| || |||||||   ||||||||| ||||||| |||||    
T  15665567 gggtgattttgtgtcaaaagttgaccctaaatcacccctctttgttggatgaagggaaagaaactagagttttggtgacg 15665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 9992693 - 9992631
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaa 167  Q
    |||||||||||| ||||||||||||| ||||||||||| || || || |||||| ||||||||    
T  9992693 gggtgattttgggtcaaaaattgaccctaaatcacccccctctaatgaatgaaggagaagaaa 9992631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 27534489 - 27534527
Alignment:
Q  110 gattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  27534489 gatttgggatcaaaaattgaccctaaatcacccctcttt 27534527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 37658994 - 37658952
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    |||||||||||  ||||||||||||| ||||||||||||||||    
T  37658994 gggtgattttgtgtcaaaaattgaccctaaatcacccctcttt 37658952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 36545867 - 36545932
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||||  | ||||||| |||||||||||    
T  36545867 gggtgatattgggtcacaaattgaccttaaatcatccctctttggtggatgaaggagaagaaacta 36545932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 39067816 - 39067860
Alignment:
Q  122 aaaattgaccttaaatcacccctctttattgatgaagaagaagaa 166  Q
    |||||||||||||||||||||||||| |  || ||||||||||||    
T  39067816 aaaattgaccttaaatcacccctcttaaaagaagaagaagaagaa 39067860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 32457674 - 32457601
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaactaaagttttg 178  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| | ||||||| |||| ||||||| ||||||    
T  32457674 gggtgattttgggtcaaaaattgacgctaaatcacccctctttagtagatgaaggagaaaaaactaaggttttg 32457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 16913356 - 16913277
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||||| || ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||  |||||| |||||    
T  16913356 gggtgatttcgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggttttggtgacg 16913277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 19759816 - 19759777
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctc 145  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  19759816 gggtgattttgggtcaaaaattgaccctaaatcacccctc 19759777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 33194631 - 33194568
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctctt-tattgatgaagaagaagaaacta 170  Q
    |||||||||||||||||||||||| |||||||||  | ||  || |||||||||||||||||||    
T  33194631 gtgattttggatcaaaaattgaccctaaatcaccaatattgaatggatgaagaagaagaaacta 33194568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 12576564 - 12576606
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 148  Q
    ||||||||| || ||||||||||||| ||||||||||||||||    
T  12576564 gggtgatttagggtcaaaaattgaccctaaatcacccctcttt 12576606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 32804322 - 32804281
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctctt 147  Q
    |||||||||||| ||||||||||||| |||||||||| ||||    
T  32804322 gggtgattttgggtcaaaaattgaccctaaatcacccatctt 32804281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 34020643 - 34020582
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaact 169  Q
    |||| |||| ||||||||||||| |||| |||||||||||  | ||||||||||||||||||    
T  34020643 tgatgttgggtcaaaaattgaccctaaaccacccctctttggtagatgaagaagaagaaact 34020582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 548951 - 548991
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatcacccctct 146  Q
    |||||||||||| |||||||||||||||| ||||| |||||    
T  548951 gggtgattttgggtcaaaaattgaccttatatcactcctct 548991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 20845036 - 20844956
Alignment:
Q  106 gggtgattttggatcaaaaattgaccttaaatca-cccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    |||||||||||| ||||||||||||||| ||| | |||||||||  | ||| ||| |||||||||||| |||||| |||||    
T  20845036 gggtgattttgggtcaaaaattgaccttgaattaccccctctttggtagataaaggagaagaaactaaggttttggtgacg 20844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 9736 - 9799
Alignment:
Q  108 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 170  Q
    |||||||||| ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  9736 gtgattttgggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 9799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 805 - 729
Alignment:
Q  109 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||| | ||||||||||||||||||||||  || |||  | ||||||| ||||||||||| ||||||| |||||    
T  805 tgatttttggtcaaaaattgaccttaaatcacatctttttggtggatgaaggagaagaaactagagttttgatgacg 729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 244647 - 244583
Alignment:
Q  121 aaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagttttgctgacg 184  Q
    ||||||||||| ||||||| ||||||||  || ||||||||||||||||| | |||||| |||||    
T  244647 aaaaattgaccctaaatcaaccctcttttgtggatgaagaagaagaaacttaggttttggtgacg 244583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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