View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11494_high_5 (Length: 511)
Name: NF11494_high_5
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_high_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 511
Target Start/End: Original strand, 43489685 - 43490185
Alignment:
| Q |
11 |
tgagaagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43489685 |
tgagtagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaag |
43489784 |
T |
|
| Q |
111 |
attgtagatgagaagccacagaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtt |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43489785 |
attgtagatgagaagccatagaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtt |
43489884 |
T |
|
| Q |
211 |
tgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43489885 |
tgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttc |
43489984 |
T |
|
| Q |
311 |
cattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43489985 |
cattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcat |
43490084 |
T |
|
| Q |
411 |
catatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg |
510 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43490085 |
catatgctctagcagctgcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg |
43490184 |
T |
|
| Q |
511 |
t |
511 |
Q |
| |
|
| |
|
|
| T |
43490185 |
t |
43490185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 510
Target Start/End: Original strand, 45013921 - 45014030
Alignment:
| Q |
401 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccatt |
500 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| |||||||||||||||| |||||| ||||| || || ||||| | |||||||| ||||| | |
|
|
| T |
45013921 |
gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgccgccttcttcggatcacgaatctctgcagcccact |
45014020 |
T |
|
| Q |
501 |
ttccccatgg |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
45014021 |
ttccccatgg |
45014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 351 - 510
Target Start/End: Original strand, 38653101 - 38653260
Alignment:
| Q |
351 |
taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc |
450 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||||| | | ||||| |||||| ||| |||| ||| ||||||||||||||||||| || |
|
|
| T |
38653101 |
taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc |
38653200 |
T |
|
| Q |
451 |
taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg |
510 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38653201 |
taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatgg |
38653260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 351 - 511
Target Start/End: Complemental strand, 13410055 - 13409895
Alignment:
| Q |
351 |
taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc |
450 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || | ||||| || | | |||||||||||||| || ||||| |||||||| ||||| || |||||||| |
|
|
| T |
13410055 |
taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc |
13409956 |
T |
|
| Q |
451 |
taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggt |
511 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13409955 |
tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggt |
13409895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 507
Target Start/End: Complemental strand, 10554722 - 10554616
Alignment:
| Q |
401 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccatt |
500 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||| || || | ||| ||||||||| |||| ||||||||||| || |||||||||| |
|
|
| T |
10554722 |
gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatctcttatttcagctgcccatt |
10554623 |
T |
|
| Q |
501 |
ttcccca |
507 |
Q |
| |
|
| ||||| |
|
|
| T |
10554622 |
tccccca |
10554616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
| Q |
400 |
agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt |
463 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
4038815 |
agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt |
4038752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 352 - 511
Target Start/End: Original strand, 44331736 - 44331895
Alignment:
| Q |
352 |
aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct |
451 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||| ||||| || | | ||||||||||| || ||||| || |||||||| || |||||||||||||| |
|
|
| T |
44331736 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
44331835 |
T |
|
| Q |
452 |
aaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggt |
511 |
Q |
| |
|
| ||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
44331836 |
agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggt |
44331895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
| Q |
404 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg |
464 |
Q |
| |
|
||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1726310 |
gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg |
1726250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
| Q |
404 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca |
456 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
2428679 |
gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca |
2428731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 6568990 - 6568908
Alignment:
| Q |
429 |
cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggt |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| ||| || | ||| || ||||||||||||||||||||| |
|
|
| T |
6568990 |
cttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggt |
6568908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 6583149 - 6583067
Alignment:
| Q |
429 |
cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggt |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| ||| || | ||| || ||||||||||||||||||||| |
|
|
| T |
6583149 |
cttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggt |
6583067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
| Q |
401 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt |
463 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
3160346 |
gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt |
3160284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
| Q |
404 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca |
456 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
44648686 |
gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca |
44648738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University