View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_high_7 (Length: 448)
Name: NF11494_high_7
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 240 - 426
Target Start/End: Original strand, 43295815 - 43296001
Alignment:
| Q |
240 |
tcaaaaaagaactttattcgattaaccaattgcttcctctagataatgtattgaaaacccgatacttaaatttgttttagatgagttctaggaatannnn |
339 |
Q |
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| T |
43295815 |
tcaaaagagaactttattcgattaaccaattgcttcctctagatattgtattgaaaacccgatacttaaatttgttttagatgagttctaggaatatatt |
43295914 |
T |
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| Q |
340 |
nnnnncaacactcattatttaattagataaaatcaatataggtcttacattttagaaataagtcatacataaagtgatgaaacctat |
426 |
Q |
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| T |
43295915 |
tttttcaacactcattatttaattagataaaatcaatataggtcttacattttagaaataagtcatacataaagtgatgagacctat |
43296001 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 43295742 - 43295813
Alignment:
| Q |
117 |
tccaccccaacaagattaaggaaaccactcagaaaactatctcaacaggtaaatgtagggttcaaaaaccca |
188 |
Q |
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| T |
43295742 |
tccaccccaacaagattaaggaaaccactcagaaaactatctcaacaggtaaatgtagggttcagaaaccca |
43295813 |
T |
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