View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11494_high_8 (Length: 437)
Name: NF11494_high_8
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_high_8 |
 | |
|
| [»] scaffold0848 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 47392128 - 47391725
Alignment:
| Q |
19 |
tcatgttgggaaagctagtactatagagattcctgtgccggggagctgctgttgttgaatctggtggtggtaaggcttgttctaaaccggttgctcatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47392128 |
tcatgttgggaaagctagtactatagagattcctgtgccggggagctgctgttgttgaatctggtggtggtaaggcttgttctaaaccggttgctcatag |
47392029 |
T |
|
| Q |
119 |
gtcttttccatcctgtaagtatcatgagggggtgaggatttggaaatggggattacatcacgaatgcgaataggatattgtcttgtgctccggttttgca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47392028 |
gtcttttccatcctgtaagtatcatgagggggtgaggatttggaaatggggattacatcacgaatgcgaatgggatattgtcttgtgctccggttttgca |
47391929 |
T |
|
| Q |
219 |
gagggagattgaattcccgaagaggtttgatctttctccgccaatgaagtgcttgttaaagagaaatgttgccatgtttgctgctggtcttagagcaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47391928 |
gagggagattgaattcccgaagaggtttgatctttctccgccaatgaagtgcttgttaaagagaaatgttgccatgtttgctgctggtcttagagcaaac |
47391829 |
T |
|
| Q |
319 |
accaagcaattgcaggagaaggggaaggccaacgtacctggtcgtagtgctgtgtcgaatttggattctccggttgtatctggggctgaaaccacggttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47391828 |
accaagcaattgcaggagaaggggaaggccaacgtacctggtcgtagtgctgtgtcgaatttggattctccggttgtatctggggctgaaaccacggtag |
47391729 |
T |
|
| Q |
419 |
atct |
422 |
Q |
| |
|
|||| |
|
|
| T |
47391728 |
atct |
47391725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 80 - 421
Target Start/End: Original strand, 40624067 - 40624407
Alignment:
| Q |
80 |
tggtggtggtaaggcttgttctaaaccggttgctcataggtcttttccatcctgtaagtatcatgagggggtgaggatttggaaatggggattacatcac |
179 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| ||| |
|
|
| T |
40624067 |
tggtggtggtaaggctcgtactaaaccggttgctcataggtcttttccaccctgtaagtttcatgagggg-tggggatttggaaatggggattaccccac |
40624165 |
T |
|
| Q |
180 |
gaatgcgaataggatattgtcttgtgctccggttttgcagagggagattgaattcccgaagaggtttgatctttctccgccaatgaagtgcttgttaaag |
279 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40624166 |
gaatgcgaatgggatattgtcttgtgctccggttttgcagagggagattgaattcccgaagaggtttgatctttctccgccaatgaagtgcttgttgaag |
40624265 |
T |
|
| Q |
280 |
agaaatgttgccatgtttgctgctggtcttagagcaaacaccaagcaattgcaggagaaggggaaggccaacgtacctggtcgtagtgctgtgtcgaatt |
379 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
40624266 |
agaaatgttgccatgtttgctgctggttttagagcaaacaccaagcaattgcaggcgaaggggaaggccaatgttcctggtcgtagtgctgtgtcaaatt |
40624365 |
T |
|
| Q |
380 |
tggattctccggttgtatctggggctgaaaccacggttgatc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40624366 |
tggattctccggttgtatctggggctgaaaccacggttgatc |
40624407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 40623977 - 40624021
Alignment:
| Q |
19 |
tcatgttgggaaagctagtactatagagattcctgtgccggggag |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40623977 |
tcatgttgggaaagctagtactatagagattcctgtgccggggag |
40624021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0848 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3755 - 3791
Alignment:
| Q |
19 |
tcatgttgggaaagctagtactatagagattcctgtg |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755 |
tcatgttgggaaagctagtactatagagattcctgtg |
3791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University