View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_high_9 (Length: 435)
Name: NF11494_high_9
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 34476240 - 34476646
Alignment:
| Q |
19 |
tttctgaaggtcttggtaatgggaaactccttttatgcagacctatgtggtgcaatgagagccattgagtttgcaaagttaaaaatttggaataatttgt |
118 |
Q |
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| T |
34476240 |
tttctgaagctcttggtaatgggaaactccttttatgcagacctatgtggtgcaatgagagctattgagtttgcaaagttaaaaaattggaataatttgt |
34476339 |
T |
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| Q |
119 |
ggttataaatagattcaatgttggtggttagagccttcaaatctacgaacaaggtgccttgaggaataagaaacaggtggaataattgtctcatcctgct |
218 |
Q |
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| T |
34476340 |
ggttataaatatattcaatgttggtggttagagccttcaaatctacgaacaaggtgccttgaggaataagaaacaggtggaataattgtctcatcctgct |
34476439 |
T |
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| Q |
219 |
atctattatgaattttgtggttattcatatttatagggagggtaatacttgtgccgatgctttagcaaacattggcttatctttgaactcttttgtctat |
318 |
Q |
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| T |
34476440 |
atctattatgaattttgtggttactcatatttatagggaggataatacttgtgctgatgctttagcaaacattggcttatctttgaactcttttgtctat |
34476539 |
T |
|
| Q |
319 |
tactatactattcatgttgaagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggtcttggcactc |
418 |
Q |
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| T |
34476540 |
tactatactattcatgttgaagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggtcttggcactc |
34476639 |
T |
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| Q |
419 |
ccctttg |
425 |
Q |
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| T |
34476640 |
ccctttg |
34476646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 411
Target Start/End: Complemental strand, 22808460 - 22808278
Alignment:
| Q |
229 |
aattttgtggttattcatatttatagggagggtaatacttgtgccgatgctttagcaaacattggcttatctttgaactcttttgtctattactatacta |
328 |
Q |
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| T |
22808460 |
aattttgtagtttctcatgtttgtagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattatagcacta |
22808361 |
T |
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| Q |
329 |
ttcatgttgaagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggtctt |
411 |
Q |
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| T |
22808360 |
ttccattggatgttaggggttattatgttaaaaataggcttggttgacctaattttaggtttactcactcttgagaaggtctt |
22808278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 34028698 - 34028628
Alignment:
| Q |
338 |
aagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggt |
408 |
Q |
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|||||||||||||||||| ||||| || | ||||||| |||||||||||||||| ||| | || ||||||| |
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| T |
34028698 |
aagttaggagtgattatgttaaaaataggtttggttggcctaattttaggtttaatcactattgagaaggt |
34028628 |
T |
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