View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_low_1 (Length: 592)
Name: NF11494_low_1
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 2950014 - 2949451
Alignment:
| Q |
16 |
aagatgaacaaaatgaatcaccaatgacgtatgatatatcttgagaattaagacatgaagttttttagttaggatgagattaatttatatatccattttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950014 |
aagatgaacaaaatgaatcaccaatgacgtatgatatatcttgagaattaagacatgaagttttttagttaggatgagattaatttatatatccattttg |
2949915 |
T |
|
| Q |
116 |
gttgctgagaaaaaagatctatcaaaagatttttctctacataaaaatgaaggattaggaaaagtatgtatgtgcctcctgttgaaaatttagtatagat |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949914 |
gttgctgagaaaaaagatctatcaaaagattttcctctacataaaaatgaaggattaggaaaagtatgtatgtgcctcctgttgaaaatttagtatagat |
2949815 |
T |
|
| Q |
216 |
attggaaagatttcaagttgaacaaagcattacaaacaagtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcccattttg |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2949814 |
attggaaagatttcaagtcgaacaaagcattacaaacaagtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcctattttg |
2949715 |
T |
|
| Q |
316 |
gtcagacaaatacataactcactcatcaaatctaggaaaaatctcctaaaaaactggcatatacacctgcttacttttgtattatagggactctttacca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949714 |
gtcagacaaatacataactcactcatcaaatctaggaaaaatctccttaaaaactggcatatacacctgcttacttttgtattatagggactctttacca |
2949615 |
T |
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| Q |
416 |
taataaggataatgnnnnnnntaataatgtctccttgaagaaagaagacgtgcagaagaggaagcatcccaagtaattaagagacatatcatgcaaggct |
515 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949614 |
taataaggataatgaaaaaaataataatgtctccttgaagaaagaagacgtgcagaagaggaagcatcccaagtaattaagagacatatcatgcaaggct |
2949515 |
T |
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| Q |
516 |
agcaattgaacacatcatgtcatatgatatatgtatgcagttaacaaaacatattgagtgtttt |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949514 |
agcaattgaacacatcatgtcatatgatatatgtatgcagttaacaaaacatattgagtgtttt |
2949451 |
T |
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