View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_low_13 (Length: 327)

Name: NF11494_low_13
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_low_13
NF11494_low_13
[»] chr3 (2 HSPs)
chr3 (140-316)||(43385911-43386087)
chr3 (17-105)||(43385776-43385864)
[»] chr6 (2 HSPs)
chr6 (17-105)||(8775200-8775288)
chr6 (140-209)||(8775319-8775388)
[»] chr4 (2 HSPs)
chr4 (17-105)||(1692084-1692172)
chr4 (140-209)||(1691984-1692053)
[»] chr8 (1 HSPs)
chr8 (256-321)||(38399322-38399387)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 43385911 - 43386087
Alignment:
Q  140 gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacaccaaagacactggggtgcagtatgaattgca 239  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43385911 gattaacttagcattaattggaagaagaggttgcagaagggttctgctgtggccattcattggaatacaccaaagacactggggtgcagtatgaattgca 43386010  T
Q  240 ggggctttcgtgattgtgaacaccttcatagcttgttaacacatagcttgaatcttccctatccctttccacccttt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43386011 ggggctttcgtgattgtgaacaccttcatagcttgttaacacatagcttgaatcttccctatccctttccacccttt 43386087  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 43385776 - 43385864
Alignment:
Q  17 aaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43385776 aaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc 43385864  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 8775200 - 8775288
Alignment:
Q  17 aaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  8775200 aaataactctgattagataacaggaagatagccaatacaacttaccaactcgatcagacctttctagccttttattaagagcagctagc 8775288  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 8775319 - 8775388
Alignment:
Q  140 gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||| |||||||||||    
T  8775319 gattaacttagcattaattggaagaagaggttgcagaagggtgctgcagcggccattcgttggaatacac 8775388  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 1692172 - 1692084
Alignment:
Q  17 aaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  1692172 aaataactgtgattagataacaggaagatagccaatacaacttaccaactcgatcagacctttctagccttttattaagagcagttagc 1692084  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 1692053 - 1691984
Alignment:
Q  140 gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||    
T  1692053 gattaacttagcattaattggaagaagaggttgcagaagggtgctgcagcggccattcattggaatacac 1691984  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 38399322 - 38399387
Alignment:
Q  256 tgaacaccttcatagcttgttaacacatagcttgaatcttccctatccctttccaccctttgcttc 321  Q
    |||||||||||||| ||||||| ||||||||| ||||| || ||||||||||||||||||| ||||    
T  38399322 tgaacaccttcataacttgttatcacatagctcgaatcatctctatccctttccacccttttcttc 38399387  T

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