View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_low_15 (Length: 314)
Name: NF11494_low_15
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 32967671 - 32967962
Alignment:
| Q |
15 |
atgctatgttacaacaggttcttgttaatttttagtggaaaaaacgaatgaaattaatgaagcatgatggtggtgacaaaaacatatattaacccattta |
114 |
Q |
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| T |
32967671 |
atgctatgttacaacaggttcttgttaatttttagtggaaaa-acgaatgaaatcaatgaagcatgatggtggtgacaaaaacatatattaacccattta |
32967769 |
T |
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| Q |
115 |
aatttcaggatcattttctcggtcagccgtaaatcacaacgcaggtgcaaaaactgcaatgtcaaacttagtaatgtctgtgacagtcatggtgacactc |
214 |
Q |
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| T |
32967770 |
aatttcaggatcattttctcggtcagccgtaaatcacaacgcaggtgcaaaaactgcaatgtcaaacttagtaatgtctgtgacagtcatggtgacactc |
32967869 |
T |
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| Q |
215 |
ctgttacttatgccattgtttcattacacacctaatgttgtattgggtgcaatcataataacagcagtgattggtctcattgatatctctgct |
307 |
Q |
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| T |
32967870 |
ctgttacttatgccattgtttcattacacacctaatgttgtattgggtgcaatcataataacagcagtgattggtctcattgatatctctgct |
32967962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 32958548 - 32958665
Alignment:
| Q |
183 |
tagtaatgtctgtgacagtcatggtgacactcctgttacttatgccattgtttcattacacacctaatgttgtattgggtgcaatcataataacagcagt |
282 |
Q |
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|||||||||| |||||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
32958548 |
tagtaatgtccgtgacagtgatggtgacactcctttttcttatgccattgttccaatacacacctaatgttgtattgggcgcaatcatagtcacagcagt |
32958647 |
T |
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| Q |
283 |
gattggtctcattgatat |
300 |
Q |
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| T |
32958648 |
gattggcctcattgatat |
32958665 |
T |
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