View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11494_low_17 (Length: 303)
Name: NF11494_low_17
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_17 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 7190716 - 7190988
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7190716 |
aagtattgtcccttatgaacaaacatctgaaacaaaaattcagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttctgggattgtgt |
7190815 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||| |
|
|
| T |
7190816 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatggatatcagattggagc----aaaaaaaatgagaagaaa-ggga |
7190910 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7190911 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaat-aaagttagggtttgaat |
7190988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 13809947 - 13809670
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13809947 |
aagtattgtcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccctaagaagaaaattgtttatgttgttttctgggattgtgt |
13809848 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggag---cnnnnnnnnnnnntgagaagaaagg |
197 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||| | |||||| |
|
|
| T |
13809847 |
ttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaaaagatgaaatgaaagg |
13809750 |
T |
|
| Q |
198 |
ggaagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13809749 |
ggaagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgggagtaaa--taaagttagggtttgaat |
13809670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 2939335 - 2939595
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
2939335 |
aagtattgtcccttatgaacaaacatctgaaacaaaaatccagatacagtcaaaattgccacaagaagaaaattgtttatgttgttttctgggtttgtgt |
2939434 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
2939435 |
ttaaaacgaagatgatgataattttgtgtttggtatagagtgaaatagaggaatataggtatcagattggagc---caaaaaaaatgagaagaaagggga |
2939531 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaa |
264 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939532 |
agagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaa |
2939595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 46015222 - 46014948
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttg-ttttcagggattgtg |
99 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46015222 |
aagtattgtcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccccaagaagaaaattgtttatgttgtttttcagggattgtg |
46015123 |
T |
|
| Q |
100 |
tttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggg |
199 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||| |||| ||||| |||||||| |
|
|
| T |
46015122 |
tttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatatagga--atgggtatcagattggag--aaaaaaaaagatgagatgaaagggg |
46015027 |
T |
|
| Q |
200 |
aagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
46015026 |
aagagagagtttgaatttgaatcaaccctttcacaacaattaaaagaatttggaagtaaaat-aaagttagggtttgaat |
46014948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33332706 - 33332427
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
33332706 |
aagtattgtcccttgtgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaacaaggaaattgtttatgttgttttctaggattgtgt |
33332607 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagc---nnnnnnnnnnnntgagaagaaagg |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||| ||||| ||||| |
|
|
| T |
33332606 |
ttgacacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgagtattagattggagcaaaaaaaaaaaaaaaagagaa-aaagg |
33332508 |
T |
|
| Q |
198 |
ggaagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
33332507 |
ggaagagagggtttgaatttgagttaaccctttcacaacaattaaatgaatttaggattaaaat-aaagttagggtttgaat |
33332427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 71196 - 70923
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
71196 |
aagtattgtcccttatgaacaaacatctgaaacaaaagtctagatacagtaaaaattgccacaagaagaatattgtttatgttgttttctaggattgtgt |
71097 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
71096 |
ttgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcataaaaaaa----gagaagaaagggga |
71001 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
71000 |
agagatggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaat-aaagttagggtttgaat |
70923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 45087788 - 45088061
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
45087788 |
aagtattgtcccttgtgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaacaaggaaattgtttatgttgttttctgggattgtgt |
45087887 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||| |||||| |||||||| |
|
|
| T |
45087888 |
ttgaaacgaagatgatgataattttgtgtttggcaaagagtgaaatagaggaatatgggtattagattggagc---aaaaaaaaatgagaa-aaagggga |
45087983 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
45087984 |
agagagggtttggatttgagttaaccctttcacaacaattaaatgaatttgggagaaaaat-aaagttagggtttgaat |
45088061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 17971308 - 17971036
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| | | |
|
|
| T |
17971308 |
aagtattgtcccttatgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaagaagaaaatcgtttatgttgttttctgggatttttt |
17971209 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||| |||||| |||||||| |
|
|
| T |
17971208 |
tttaaacgaagatgatgataattttgtgtttggcagagggtgaaatagagga--atgggtatcagattggag---aaaaaaaaaatgagaacaaagggga |
17971114 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17971113 |
agagagggtttgaatttgggttaaccctttcacaaaaattaaaagaatttgggagtaaaa-caaagttagggtttgaat |
17971036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 9311714 - 9311988
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9311714 |
aagtattatcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccccaagaagaaaattgtttatgttgttttttgggattgtgt |
9311813 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||| |||||||||||||||||| ||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
9311814 |
ttgaaaagaaggtgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtatcagaatggag-aaaaaaaaaagatgagatgaaagggga |
9311910 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9311911 |
agagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgggagtaaaat-aaagttagggtttgaat |
9311988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 14817383 - 14817658
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14817383 |
aagtattgtcccatatgaacaaacatcttaaacaaaaattcagatacaataaaaatttccccaagaagaaaattgtttatgttgttttctgggattatgt |
14817482 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggag-cnnnnnnnnnnnntgagaagaaagggg |
199 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||| | |||||||| |
|
|
| T |
14817483 |
ttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaagatgaaatgaaagggg |
14817580 |
T |
|
| Q |
200 |
aagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14817581 |
aagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgagagtaaaataaa--ttagggtttgaat |
14817658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 14828356 - 14828081
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14828356 |
aagtattgtcccatatgaacaaacatcttaaacaaaaattcagatacaataaaaatttccccaagaagaaaattgtttatgttgttttctgggattatgt |
14828257 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggag-cnnnnnnnnnnnntgagaagaaagggg |
199 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||| | |||||||| |
|
|
| T |
14828256 |
ttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaagatgaaatgaaagggg |
14828159 |
T |
|
| Q |
200 |
aagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14828158 |
aagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgagagtaaaataaa--ttagggtttgaat |
14828081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 39992028 - 39991770
Alignment:
| Q |
2 |
agtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgtt |
101 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39992028 |
agtattgttccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgctccaagaagaaaattgtttatgttgttttctgggattgtgtt |
39991929 |
T |
|
| Q |
102 |
tgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaaggggaa |
201 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
39991928 |
tgaaaagaa-atgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggag-aaagaaaaaagatgagatgaaaggggaa |
39991833 |
T |
|
| Q |
202 |
gagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaa |
264 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39991832 |
gagagggtttgaatttgaattaaccctttcacaacaattaaaagaacttgggagtaaaataaa |
39991770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 11039270 - 11039544
Alignment:
| Q |
1 |
aagtattgtcccttatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtgt |
100 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
11039270 |
aagtattgtgccatatgaacaaacatctgaaacaaaaatccatatacaataaaaattgccccaagaagaaaattatttatgttgttttttgggattgtgt |
11039369 |
T |
|
| Q |
101 |
ttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggga |
200 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||| |||| |||| |||| ||||| |||||| || |
|
|
| T |
11039370 |
ttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtattagattggag-aaaaaaaaaagatgagatgaaaggaga |
11039466 |
T |
|
| Q |
201 |
agagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaaagttagggtttgaat |
279 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11039467 |
agagagggtttgaatttgaattaaccctttcacaacaattaaaacaatttgggagtaaaat-aaagttagggtttgaat |
11039544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 19718418 - 19718663
Alignment:
| Q |
1 |
aagtattgtccct-tatgatcaaacatctgaaacaaaaatccagatacagtaaaaattgccgcaagaagaaaattgtttatgttgttttcagggattgtg |
99 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19718418 |
aagtattgtccccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgttccaagaagaaaattgtttatgttgttttttgggattgtg |
19718517 |
T |
|
| Q |
100 |
tttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatgggtatcagataggagcnnnnnnnnnnnntgagaagaaagggg |
199 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
19718518 |
tttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtatcagattggag--gaaaaaaaaaatgagatgaaagggg |
19718613 |
T |
|
| Q |
200 |
aagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatt |
249 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
19718614 |
aagagagggtttgaacttgaattaaccctttcacaacaattaaaacaatt |
19718663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 37967468 - 37967514
Alignment:
| Q |
230 |
tcacaacaattaaaagaatttgggagtaaaataaaagttagggtttga |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
37967468 |
tcacaacaattaaaagaattcgggagtaaaat-aaagttagggtttga |
37967514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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