View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11494_low_18 (Length: 302)
Name: NF11494_low_18
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 52610685 - 52610957
Alignment:
| Q |
18 |
gttttgaactttcagtttgtatgaatttataatgtgtttaacattctatttatatgtatttgcactattcttgttcctaaggctgcaaaactattttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52610685 |
gttttgaactttcagtttgtatgaatttataatgtgttaaacattctatttatatgtatttgcactattcttgttcctaaggctacaaaactattttctt |
52610784 |
T |
|
| Q |
118 |
aaaaaatttggaactcnnnnnnngtttaatcttttgatgcaatgctccaacaacatcattcttgcaatgctcctgagtacttaacttaaatcataagaat |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52610785 |
aaaaaatttggaactctttttttgtttaatcttttgatgcaatgctccaacaacatcattcttgcaatgctcctgagtacttaacttaaatcataagaat |
52610884 |
T |
|
| Q |
218 |
ttcaagtgttctcattcaaaaacatgcttctgcaaagttttgaaacaaaacaaaatccttatcaattgacctttg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
52610885 |
ttcaagtgttctcattcaaaaacatgcttatgcaaagttctgaaac--aacaaaatccttatcaattgacctttg |
52610957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 36228573 - 36228689
Alignment:
| Q |
165 |
caacaacatcattcttgcaatgctcctgagtacttaacttaaatcataagaatttcaagtgttctcattcaaaaacatgcttctgcaaagttttgaaaca |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36228573 |
caacaacatcattcttgcaatgctcctgagtactt-----aaatcataagaatttcaaatgttctcattcaaaaacatgcttctgcaaagttttgaaaca |
36228667 |
T |
|
| Q |
265 |
aaacaaaatccttatcaattga |
286 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36228668 |
aaacaaaatccttatcaattga |
36228689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 52422741 - 52422824
Alignment:
| Q |
203 |
ttaaatcataagaatttcaagtgttctcattcaaaaacatgcttctgcaaagttttgaaacaaaacaaaatccttatcaattga |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52422741 |
ttaaatcataagaatttcaagtgttctcattcaaaaacatgcttctgcaaagttttaaaacaaaacaaaatccttatcaattga |
52422824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 52422235 - 52422322
Alignment:
| Q |
94 |
ctaaggctgcaaaactattttcttaaaaaatttggaactcnnnnnnn-gtttaatcttttgatgcaatgctccaacaacatcattctt |
180 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52422235 |
ctaaggctacgaaactattttcttaaaaaatgtggagctcctttttttgtttaatcttttgatccaatgctccaacaacatcattctt |
52422322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 23881376 - 23881309
Alignment:
| Q |
18 |
gttttgaactttcagtttgtatgaatttataatgtgtttaacattctatttatatgtatttgcactat |
85 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
23881376 |
gttttgaactcttagtttgtatgaatttataatgtttttaactttctatttgtatgtatttgcactat |
23881309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 31331013 - 31331080
Alignment:
| Q |
18 |
gttttgaactttcagtttgtatgaatttataatgtgtttaacattctatttatatgtatttgcactat |
85 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||| |||| ||| |||||||||||||||| |
|
|
| T |
31331013 |
gttttgaactttctgtttttatgaatttataatgtttttaactttctttttctatgtatttgcactat |
31331080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 7705617 - 7705546
Alignment:
| Q |
215 |
aatttcaagtgttctcattcaaaaacatgcttctgcaaagttttgaaacaaaacaaaatccttatcaattga |
286 |
Q |
| |
|
||||| ||||||| || ||||| |||| ||||||||||||||||||| || | |||||||||||| ||||| |
|
|
| T |
7705617 |
aatttgaagtgttatccttcaagaacacacttctgcaaagttttgaaataacagaaaatccttatctattga |
7705546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 8150249 - 8150206
Alignment:
| Q |
243 |
gcttctgcaaagttttgaaacaaaacaaaatccttatcaattga |
286 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
8150249 |
gcttctgcaaagttttgaaataatagaaaatccttatcaattga |
8150206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University