View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_low_2 (Length: 563)
Name: NF11494_low_2
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 543
Target Start/End: Complemental strand, 36725445 - 36724923
Alignment:
| Q |
21 |
gatggttgtgaatcaatgggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgagggaatgnnnnnnnnacaa |
120 |
Q |
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| T |
36725445 |
gatggttgtaaatcaatgggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgatgggatgtttttct-acaa |
36725347 |
T |
|
| Q |
121 |
ctgatagtcttatttacgcgtctttagctcatatgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatcnnnn |
220 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36725346 |
ctgatagtcttatttacgcgtctttagctcatgtgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatctttt |
36725247 |
T |
|
| Q |
221 |
nnnatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaagtact |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36725246 |
tt-atcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggaaagtact |
36725148 |
T |
|
| Q |
321 |
cggtgcagagtgcctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaagttcc |
420 |
Q |
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| T |
36725147 |
cagtgcagtgtgcctatagaatatgtgttaatgaaattgctaataacacctatttgcatttactggatcattggaatctagtttggaaactcaaagttcc |
36725048 |
T |
|
| Q |
421 |
acctaaaataaaaaatcttgtttggcgt--gtgtcgttgttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgta |
518 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36725047 |
acctaaaataaaaaatcttgtttggcgtgtgtgtcgttgctgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgta |
36724948 |
T |
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| Q |
519 |
atatgtggaagtaattatgaggatg |
543 |
Q |
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| T |
36724947 |
atatgtggaagtaattatgaggatg |
36724923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 541
Target Start/End: Original strand, 716721 - 716804
Alignment:
| Q |
458 |
ttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagtaattatgagga |
541 |
Q |
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| T |
716721 |
ttgttttccaacatgagcacacctaattagtagataggttcattgtccaatagattgtgtaatgtgtgaaagtaattatgagga |
716804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 119 - 435
Target Start/End: Original strand, 8266464 - 8266782
Alignment:
| Q |
119 |
aactgatagtcttatttacgcgtctttagctcatatgaaggt-aaag--gatattcttgatcaatcctccaaggtatggaattctcctttaatttataat |
215 |
Q |
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||||||||| | ||||||||| ||||| |||||| ||||||| |||| ||||| ||| | |||||||||| |||||||||| ||| ||||||||| ||| |
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| T |
8266464 |
aactgatagccctatttacgcatctttcgctcatgtgaaggtgaaagatgatatccttaaacaatcctccagggtatggaatgctcatttaatttacaat |
8266563 |
T |
|
| Q |
216 |
cnnnnnnnatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaa |
315 |
Q |
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| T |
8266564 |
ctttttttatcaaaatacttcccaactgattttgaatacacatttacaatctctggttaatgaagataagttgatttggaaggctg-aaaagaatggtaa |
8266662 |
T |
|
| Q |
316 |
gtactcggtgcagagtgcctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaa |
415 |
Q |
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| T |
8266663 |
ctattcggtgtgtagtgcctatagaatatgtgtaagtgaaattgctaataattctcatttgcatataccatgtcgttgaaatttagtttggaaactcaaa |
8266762 |
T |
|
| Q |
416 |
gttccacctaaaataaaaaa |
435 |
Q |
| |
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|| | |||||| |||||||| |
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| T |
8266763 |
gtcctacctaagataaaaaa |
8266782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 29713826 - 29713912
Alignment:
| Q |
224 |
atcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatg |
311 |
Q |
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|||| ||||||| ||||| || |||||||||||||||||| ||||||||| || |||||||||||||||||| || |||||||||| |
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| T |
29713826 |
atcataacacggctcagcttatattgaatactcctttacaaaatttggttgaggaagataagttgatttggaaggct-gaaaagaatg |
29713912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 33907552 - 33907504
Alignment:
| Q |
399 |
tagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcg |
447 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
33907552 |
tagtgtggaagctcaaagtgccacctaaaataaaaaatctaatttggcg |
33907504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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