View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_low_26 (Length: 241)

Name: NF11494_low_26
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_low_26
NF11494_low_26
[»] chr3 (2 HSPs)
chr3 (1-223)||(34760842-34761069)
chr3 (113-162)||(25447298-25447347)
[»] chr4 (3 HSPs)
chr4 (172-225)||(43729812-43729865)
chr4 (110-159)||(28300350-28300399)
chr4 (16-99)||(7367986-7368070)
[»] chr1 (3 HSPs)
chr1 (93-162)||(9572142-9572211)
chr1 (117-161)||(3495693-3495737)
chr1 (113-162)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (49-132)||(25422347-25422431)
chr7 (113-162)||(20526413-20526462)
chr7 (113-162)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (92-162)||(1402963-1403033)
chr6 (113-162)||(2735036-2735085)
[»] chr5 (1 HSPs)
chr5 (113-162)||(26516367-26516416)
[»] chr8 (1 HSPs)
chr8 (80-136)||(29592194-29592250)
[»] chr2 (1 HSPs)
chr2 (117-161)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34761069 - 34760842
Alignment:
Q  1 cctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaatttatgacatgtttataagctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761069 cctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaatttatgacatgtttataagctc 34760970  T
Q  101 tcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc-----nnnnnnnnattttgttgcagagtccagatggtg 195  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||             |||||||||||||||||||||||||    
T  34760969 tcagtgatcgcctatgaaaacagtttatagcttatataaacatagtttaactttattttatctttttatttatttattttgttgcagagtccagatggtg 34760870  T
Q  196 atttgatagattgtattttatctcatca 223  Q
    ||||||||||||||||||||||||||||    
T  34760869 atttgatagattgtattttatctcatca 34760842  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 25447298 - 25447347
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||||||||||||||||||||||||||   | ||||| |||||||||||    
T  25447298 tatgaaaacagtttatagcttatacaaaaacaatttaagtttattttatc 25447347  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 43729865 - 43729812
Alignment:
Q  172 ttttgttgcagagtccagatggtgatttgatagattgtattttatctcatcaac 225  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  43729865 ttttgttgcagagtccagatggagatttgatagattgtattatatctcatcaac 43729812  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 28300350 - 28300399
Alignment:
Q  110 gcctatgaaaacagtttatagcttatacaaacgtagtttaactttatttt 159  Q
    ||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  28300350 gcctatgaaaatagtttatagcttatacaaaaacaatttaactttatttt 28300399  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 7367986 - 7368070
Alignment:
Q  16 ttatttgagtttatatactgtcgtaaacattcgtgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagct 99  Q
    |||||||||||||| ||| | | |||||  | ||||||||||||| || || ||||| |||||  ||||||||||||||||||||    
T  7367986 ttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagct 7368070  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 9572142 - 9572211
Alignment:
Q  93 ataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||| ||||| |||| || ||||||||| | |||||||||||||||| | | |||||||||||||||||    
T  9572142 ataagttctcaatgatggcatatgaaaacggcttatagcttatacaaaagcaatttaactttattttatc 9572211  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 3495693 - 3495737
Alignment:
Q  117 aaaacagtttatagcttatacaaacgtagtttaactttattttat 161  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  3495693 aaaacaatttataggttatacaaacgtaatttaactttattttat 3495737  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 48830130 - 48830179
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||||||||||||||||||||||  ||  |||||| |||||||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatc 48830179  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 25422431 - 25422347
Alignment:
Q  49 tgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagct 132  Q
    |||||||||||| || || | |||||||||  ||||||||||||||||| |||||  |||| |||| |||||||| |||||||||    
T  25422431 tgagactgtttgggagagcttatggaaacaccttatgacatgtttataaactctccatgatagcctgtgaaaacaatttatagct 25422347  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 20526462 - 20526413
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||||||||| ||||||| | ||||||| || |||||||||||||||||    
T  20526462 tatgaaaacagcttatagcatgtacaaacataatttaactttattttatc 20526413  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 22283798 - 22283847
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    |||||||||||||||||||| |||||||   | |||||||||||||||||    
T  22283798 tatgaaaacagtttatagctgatacaaaaacaatttaactttattttatc 22283847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 1403033 - 1402963
Alignment:
Q  92 tataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    |||||| ||||  |||| || |||||||||| |||||||||||||  ||  ||||||||||||||||||||    
T  1403033 tataagatctccatgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatc 1402963  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 2735085 - 2735036
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||||||||| |||||| |||||||||  || |||||||||||||||||    
T  2735085 tatgaaaacagcttatagattatacaaaaataatttaactttattttatc 2735036  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 26516416 - 26516367
Alignment:
Q  113 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 162  Q
    ||||||||||||||||| ||||||  || ||||||| |||||||||||||    
T  26516416 tatgaaaacagtttataacttatatgaaagtagtttgactttattttatc 26516367  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 29592194 - 29592250
Alignment:
Q  80 ttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttata 136  Q
    |||||||||||  |||||||||| | ||| || ||||||||||| ||||||||||||    
T  29592194 ttatgacatgtccataagctctctgggatagcttatgaaaacagattatagcttata 29592250  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 44439418 - 44439462
Alignment:
Q  117 aaaacagtttatagcttatacaaacgtagtttaactttattttat 161  Q
    |||||| |||||||||||||||||   ||||||||||||||||||    
T  44439418 aaaacaatttatagcttatacaaaaacagtttaactttattttat 44439462  T

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