View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_low_27 (Length: 231)

Name: NF11494_low_27
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_low_27
NF11494_low_27
[»] chr4 (36 HSPs)
chr4 (11-231)||(48852698-48852918)
chr4 (11-195)||(49044019-49044200)
chr4 (39-173)||(48170419-48170553)
chr4 (39-185)||(45371923-45372072)
chr4 (112-195)||(49048503-49048586)
chr4 (121-187)||(45384825-45384891)
chr4 (118-217)||(7877775-7877873)
chr4 (126-188)||(37826938-37827000)
chr4 (50-176)||(48147579-48147705)
chr4 (39-88)||(48903115-48903164)
chr4 (39-80)||(50250626-50250667)
chr4 (118-193)||(7771450-7771528)
chr4 (118-193)||(7790135-7790213)
chr4 (118-190)||(7908392-7908464)
chr4 (38-78)||(48705236-48705276)
chr4 (135-187)||(48705330-48705382)
chr4 (118-182)||(48903013-48903077)
chr4 (38-80)||(7773682-7773724)
chr4 (118-176)||(48891499-48891557)
chr4 (135-176)||(48735353-48735394)
chr4 (42-74)||(48863421-48863453)
chr4 (42-74)||(49041006-49041038)
chr4 (52-91)||(48891593-48891632)
chr4 (141-187)||(45366183-45366229)
chr4 (118-196)||(48898777-48898855)
chr4 (40-78)||(48898898-48898936)
chr4 (39-80)||(7771563-7771604)
chr4 (39-80)||(7790248-7790289)
chr4 (129-190)||(48870603-48870664)
chr4 (129-190)||(48886289-48886350)
chr4 (39-80)||(50669247-50669288)
chr4 (117-193)||(7237676-7237752)
chr4 (42-82)||(7765802-7765842)
chr4 (50-82)||(45366086-45366118)
chr4 (38-74)||(48876026-48876062)
chr4 (137-217)||(50669101-50669181)
[»] chr6 (2 HSPs)
chr6 (31-195)||(21015877-21016041)
chr6 (111-184)||(21979561-21979634)
[»] chr8 (4 HSPs)
chr8 (39-200)||(4031758-4031919)
chr8 (109-224)||(12195339-12195454)
chr8 (109-224)||(12439767-12439882)
chr8 (40-78)||(15349044-15349082)
[»] chr3 (6 HSPs)
chr3 (42-224)||(47451758-47451949)
chr3 (40-104)||(11005778-11005842)
chr3 (135-195)||(11005894-11005954)
chr3 (135-195)||(11015457-11015517)
chr3 (33-104)||(11015334-11015405)
chr3 (135-190)||(11024469-11024524)
[»] chr5 (5 HSPs)
chr5 (118-182)||(179112-179176)
chr5 (42-83)||(179217-179258)
chr5 (42-90)||(9119915-9119963)
chr5 (33-77)||(29696401-29696445)
chr5 (132-172)||(29712416-29712456)
[»] chr7 (1 HSPs)
chr7 (121-186)||(48883881-48883946)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 48852918 - 48852698
Alignment:
Q  11 caaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48852918 caaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaggc 48852819  T
Q  111 attcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852818 attcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatca 48852719  T
Q  211 taggacattaaaactaacaag 231  Q
    |||||||||||||||| ||||    
T  48852718 taggacattaaaactaccaag 48852698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 49044019 - 49044200
Alignment:
Q  11 caaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagc 110  Q
    ||||||| |||||||||||   ||||| ||||||| || ||||||||||||| ||||||||||||||||| |||||||||||  ||| || ||| ||       
T  49044019 caaaggcaacaataacatt---cattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgaccctaccatggaataatcagagaa 49044115  T
Q  111 attcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 195  Q
     || || |||||||||| |||| |||||||||| ||||||  |||| ||||||||||||||||||| |||||| |||||| ||||    
T  49044116 gtttatataagggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgtaatgaaatatta 49044200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 48170419 - 48170553
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagcattcatgtaagggaagtgagtaccctca 138  Q
    |||||||||| || |||| |||||||||||| |||| |||||||| ||||||||||||||||||||  |  ||||||| ||||||||| ||||||||||     
T  48170419 taaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtaccctct 48170518  T
Q  139 atttctttccatgcattagctctcaatgagaaaaa 173  Q
    | | ||||||| | |||| |||| |||||||||||    
T  48170519 agtactttccaggtattatctcttaatgagaaaaa 48170553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 45371923 - 45372072
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatca---tcggaagcattcatgtaagggaagtgagtaccc 135  Q
    ||||||||||||||||| |||||||| ||||||||||||||  |  |||||| |||| || |||   ||   ||| ||||  ||||||||||||||||||    
T  45371923 taaatcatgacgaaaagacaaccaataaatagccccattaaggaaggaccctcctctaggttcaaattcattagcgttcaaataagggaagtgagtaccc 45372022  T
Q  136 tcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtga 185  Q
    |||| |||| |||| | |||| ||||||||||||||||||| ||||||||    
T  45372023 tcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtga 45372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 49048503 - 49048586
Alignment:
Q  112 ttcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 195  Q
    ||||| ||||||| |||||||||||||||||||||||||  |||| ||||||| ||||||||||| ||||||||||||| ||||    
T  49048503 ttcatataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaaaaatta 49048586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 45384825 - 45384891
Alignment:
Q  121 gggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatg 187  Q
    |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||    
T  45384825 gggaagtgagcaccctgaatttctttccatgcattagctctcaacgagaaaaactccaagtgtgatg 45384891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 7877873 - 7877775
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggaca 217  Q
    ||||||||| |||||| |||| |||||||||||| |||| |||| |||||||||||||  ||||||| ||||| |||| ||| ||||| || ||||||||    
T  7877873 taagggaagggagtactctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtgttgaaa-attaactatggttggattataggaca 7877775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 37826938 - 37827000
Alignment:
Q  126 gtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatga 188  Q
    ||||||||||||||||||| |||||| |||| || |||| ||||||||||| |||||||||||    
T  37826938 gtgagtaccctcaatttctctccatgaattatctttcaacgagaaaaactccaaatgtgatga 37827000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 48147579 - 48147705
Alignment:
Q  50 gaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagcattcatgtaagggaagtgagtaccctcaatttctttcca 149  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||  | ||||| |    |  ||| ||||||||  |||||||||||| |||||||||    
T  48147579 gaaaagccaaccaatgaatagccccactaaaaagtgaccctactctatgctcatcagggtaaagcatataagggaacggagtaccctcaagttctttcca 48147678  T
Q  150 tgcattagctctcaatgagaaaaactc 176  Q
       | || ||||||| |||||||||||    
T  48147679 catactatctctcaacgagaaaaactc 48147705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 48903164 - 48903115
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgacc 88  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  48903164 taaatcatgatgaaaagccaactaatgaatagccccattaaagagcgacc 48903115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 50250626 - 50250667
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 80  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  50250626 taaatcataacgaaaagccaaccaatgaatagccccattaaa 50250667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 7771528 - 7771450
Alignment:
Q  118 taagggaagtgagta---ccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacat 193  Q
    |||||||||||||||   || |||||||||||||| | |||| |||| |||||||||| ||| ||||||||||||||||    
T  7771528 taagggaagtgagtatgaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaacat 7771450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 7790213 - 7790135
Alignment:
Q  118 taagggaagtgagta---ccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacat 193  Q
    |||||||||||||||   || |||||||||||||| | |||| |||| |||||||||| ||| ||||||||||||||||    
T  7790213 taagggaagtgagtattaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaacat 7790135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 7908464 - 7908392
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaa 190  Q
    |||||||||| | ||||||||||||||||||||| |||| |||| | |||||||||||  ||||||| |||||    
T  7908464 taagggaagtaattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 7908392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 48705236 - 48705276
Alignment:
Q  38 gtaaatcatgacgaaaagccaaccaatgaatagccccatta 78  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  48705236 gtaaatcatgacgataagccaaccaatgaatagccccatta 48705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 48705330 - 48705382
Alignment:
Q  135 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatg 187  Q
    ||||||||||||||||| |||| ||||||||||||||||||| || |||||||    
T  48705330 ctcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgatg 48705382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 48903077 - 48903013
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatg 182  Q
    |||||||||||||| ||||| || | |||||||| |||| ||||||||||||||| |||||||||    
T  48903077 taagggaagtgagttccctccatctgtttccatgtattatctctcaatgagaaaatctctaaatg 48903013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 7773682 - 7773724
Alignment:
Q  38 gtaaatcatgacgaaaagccaaccaatgaatagccccattaaa 80  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  7773682 gtaaatcacgacgcaaagccaaccaatgaatagccccattaaa 7773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 48891557 - 48891499
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactc 176  Q
    |||||||| | |||||||||||||||||||||   |||| |||||||||||||||||||    
T  48891557 taagggaaataagtaccctcaatttctttccacatattatctctcaatgagaaaaactc 48891499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 48735353 - 48735394
Alignment:
Q  135 ctcaatttctttccatgcattagctctcaatgagaaaaactc 176  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  48735353 ctcaatttctttccaggtattagctctcaatgagaaaaactc 48735394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 48863453 - 48863421
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagcccc 74  Q
    |||||||||||||||||||||||||||||||||    
T  48863453 atcatgacgaaaagccaaccaatgaatagcccc 48863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 49041006 - 49041038
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagcccc 74  Q
    |||||||||||||||||||||||||||||||||    
T  49041006 atcatgacgaaaagccaaccaatgaatagcccc 49041038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 48891632 - 48891593
Alignment:
Q  52 aaagccaaccaatgaatagccccattaaaaagcgacccta 91  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  48891632 aaagccaaccaatgaagagccccattaacaagcgacccta 48891593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 45366183 - 45366229
Alignment:
Q  141 ttctttccatgcattagctctcaatgagaaaaactctaaatgtgatg 187  Q
    ||||||||||| |||||||||||||||||||| ||| || |||||||    
T  45366183 ttctttccatgtattagctctcaatgagaaaatctccaagtgtgatg 45366229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 48898855 - 48898777
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattag 196  Q
    |||||| | ||||| | ||||||||| |||||  ||||| ||||||||||||||||||| || |||||| ||| |||||    
T  48898855 taagggcattgagtgcactcaatttccttccacacattatctctcaatgagaaaaactccaagtgtgataaaatattag 48898777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 48898936 - 48898898
Alignment:
Q  40 aaatcatgacgaaaagccaaccaatgaatagccccatta 78  Q
    |||||| || |||||||||||||||||||||||||||||    
T  48898936 aaatcacgatgaaaagccaaccaatgaatagccccatta 48898898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 7771604 - 7771563
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 80  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  7771604 taaatcacggcgataagccaaccaatgaatagccccattaaa 7771563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 7790289 - 7790248
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 80  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  7790289 taaatcacggcgataagccaaccaatgaatagccccattaaa 7790248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 48870664 - 48870603
Alignment:
Q  129 agtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaa 190  Q
    ||||| |||||||| | |||| | ||| |||||||||||||||||||| || ||||||||||    
T  48870664 agtacactcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaa 48870603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 48886350 - 48886289
Alignment:
Q  129 agtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaa 190  Q
    ||||| |||||||| | |||| | ||| |||||||||||||||||||| || ||||||||||    
T  48886350 agtacactcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaa 48886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 50669288 - 50669247
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 80  Q
    |||||||| ||||||||||||||||| ||||||| |||||||    
T  50669288 taaatcataacgaaaagccaaccaataaatagcctcattaaa 50669247  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 7237676 - 7237752
Alignment:
Q  117 gtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacat 193  Q
    ||||||||| ||| |||  ||||||||||||||   |||| |||| || ||||||| ||| ||||||||||||||||    
T  7237676 gtaagggaaatgaatacaatcaatttctttccacatattatctctaaaagagaaaacctccaaatgtgatgaaacat 7237752  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 7765842 - 7765802
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagccccattaaaaa 82  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  7765842 atcatgacgcgaagacaaccaatgaatagccccattaaaaa 7765802  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 45366086 - 45366118
Alignment:
Q  50 gaaaagccaaccaatgaatagccccattaaaaa 82  Q
    ||||||| |||||||||||||||||||||||||    
T  45366086 gaaaagcaaaccaatgaatagccccattaaaaa 45366118  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 48876062 - 48876026
Alignment:
Q  38 gtaaatcatgacgaaaagccaaccaatgaatagcccc 74  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  48876062 gtaaatcatcacgataagccaaccaatgaatagcccc 48876026  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 50669181 - 50669101
Alignment:
Q  137 caatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggaca 217  Q
    |||||| |||||||| |||| |||||| |||||||||||| |||| || ||||| || | | | ||||| |||||||||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggaca 50669101  T

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Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 21016041 - 21015877
Alignment:
Q  31 ttcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagcattcatgtaagggaagtgag 130  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| || ||| || | |||||||||||||||| |||    
T  21016041 ttcattgataaatcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctaccatggaataatcagaggtattcatgtaagggaagggag 21015942  T
Q  131 taccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 195  Q
    |||||||||||||||||||   |||| ||||||| |||||||||||||| |||||||||| ||||    
T  21015941 taccctcaatttctttccacctattatctctcaacgagaaaaactctaactgtgatgaaaaatta 21015877  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 21979561 - 21979634
Alignment:
Q  111 attcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtg 184  Q
    |||||| |||||||| |||| ||||||||||| |||||| | |||| ||||||| ||||||| ||| |||||||    
T  21979561 attcatataagggaaatgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaatgtg 21979634  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 4031758 - 4031919
Alignment:
Q  39 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagcattcatgtaagggaagtgagtaccctca 138  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||  || ||||| || |||||||| ||  |||||||     
T  4031758 taaatcatgacgaaaagccaaccaatgaatagatccactaaaaagcgaccctactctgggatcatgagaggcatttatataagggaaatggataccctcg 4031857  T
Q  139 atttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaa 200  Q
    |||||||||||||  || ||||||| |||||||||||| ||||||||||||| |||||||||    
T  4031858 atttctttccatgtgttggctctcagtgagaaaaactccaaatgtgatgaaatattagctaa 4031919  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 12195454 - 12195339
Alignment:
Q  109 gcattcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtat 208  Q
    |||||||  |||| || ||||| ||| |||||||| |||||   |||| |||||||||||||||| |||||||  ||||||   ||  ||||||||| ||    
T  12195454 gcattcaaataagtgatgtgaggaccttcaatttcattccacttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggat 12195355  T
Q  209 cataggacattaaaac 224  Q
    ||||||||| ||||||    
T  12195354 cataggacaataaaac 12195339  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 12439882 - 12439767
Alignment:
Q  109 gcattcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtat 208  Q
    |||||||  |||| || ||||| ||| |||||||| |||||   |||| |||||||||||||||| |||||||  ||||||   ||  ||||||||| ||    
T  12439882 gcattcaaataagtgatgtgaggaccttcaatttcattccacttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggat 12439783  T
Q  209 cataggacattaaaac 224  Q
    ||||||||| ||||||    
T  12439782 cataggacaataaaac 12439767  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 15349082 - 15349044
Alignment:
Q  40 aaatcatgacgaaaagccaaccaatgaatagccccatta 78  Q
    |||||| || |||||||||||||||||||||||||||||    
T  15349082 aaatcacgatgaaaagccaaccaatgaatagccccatta 15349044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 47451758 - 47451949
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaagcattcatgtaagggaagtgagtacc------- 134  Q
    ||||||||||||||||||||||| |||||||||||| || ||| |||||||||| ||||||||  | | |||||| |||||||||||||||||           
T  47451758 atcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactctaggatcatcacatgaattcatataagggaagtgagtaccagtagta 47451857  T
Q  135 --ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggacattaaaac 224  Q
      |||||||||||||||||||||||||||||| || ||||||||||| |||||| ||| ||||||| || ||| ||||| ||||||||||||    
T  47451858 cactcaatttctttccatgcattagctctcaacgaaaaaaactctaagtgtgataaaaaattagctgagtttggatcatcggacattaaaac 47451949  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 11005778 - 11005842
Alignment:
Q  40 aaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatc 104  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||| ||||||  ||||||||||    
T  11005778 aaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatc 11005842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 11005894 - 11005954
Alignment:
Q  135 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 195  Q
    ||||||||||||||||| ||| |||||||||||||||||||  ||| ||||||||| ||||    
T  11005894 ctcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaatatta 11005954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 11015457 - 11015517
Alignment:
Q  135 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 195  Q
    ||||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| ||||    
T  11015457 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatatta 11015517  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 11015334 - 11015405
Alignment:
Q  33 cattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatc 104  Q
    ||||| ||||||||| |||||||  ||||||||||||| ||||||||| |||  ||||||| ||||||||||    
T  11015334 cattgataaatcatggcgaaaagagaaccaatgaatagtcccattaaagagcatccctactttgggatcatc 11015405  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 11024469 - 11024524
Alignment:
Q  135 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaa 190  Q
    ||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||    
T  11024469 ctcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatgaaa 11024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 179176 - 179112
Alignment:
Q  118 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatg 182  Q
    |||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||| ||| |||||    
T  179176 taagggcagtgaataccctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 179258 - 179217
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagccccattaaaaag 83  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  179258 atcatgacgaaaagagaaccaatgaatagccccattaaaaag 179217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 9119963 - 9119915
Alignment:
Q  42 atcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccct 90  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  9119963 atcatgacgaaaagcgaaccaatgaatagacccattgaaaagagaccct 9119915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 29696445 - 29696401
Alignment:
Q  33 cattggtaaatcatgacgaaaagccaaccaatgaatagccccatt 77  Q
    ||||| || ||||| ||||||||||||||| ||||||||||||||    
T  29696445 cattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 29712416 - 29712456
Alignment:
Q  132 accctcaatttctttccatgcattagctctcaatgagaaaa 172  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  29712416 accctcaatttcgttccacgcatcagctctcaatgagaaaa 29712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 48883946 - 48883881
Alignment:
Q  121 gggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgat 186  Q
    |||||||||| | ||||||||||||||||   |||| |||||||||||||| |||| |||||||||    
T  48883946 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 48883881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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