View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11494_low_3 (Length: 554)

Name: NF11494_low_3
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11494_low_3
NF11494_low_3
[»] chr3 (20 HSPs)
chr3 (16-340)||(26529576-26529900)
chr3 (340-519)||(37742723-37742899)
chr3 (341-516)||(44380252-44380427)
chr3 (343-510)||(33509684-33509851)
chr3 (418-513)||(50934501-50934596)
chr3 (368-514)||(47426350-47426496)
chr3 (451-521)||(32319473-32319543)
chr3 (448-516)||(10179868-10179936)
chr3 (418-514)||(47186175-47186271)
chr3 (345-516)||(35094544-35094717)
chr3 (418-514)||(31187145-31187241)
chr3 (448-516)||(10018671-10018739)
chr3 (418-514)||(42664673-42664769)
chr3 (341-516)||(17466271-17466446)
chr3 (418-514)||(34029366-34029462)
chr3 (362-512)||(39498689-39498838)
chr3 (448-516)||(10123211-10123279)
chr3 (341-395)||(19619217-19619271)
chr3 (461-513)||(21963073-21963125)
chr3 (459-499)||(25859037-25859077)
[»] chr2 (14 HSPs)
chr2 (342-516)||(34392080-34392254)
chr2 (341-516)||(7381690-7381864)
chr2 (340-500)||(23863800-23863958)
chr2 (71-225)||(43779399-43779553)
chr2 (341-516)||(37357915-37358094)
chr2 (418-516)||(21603957-21604055)
chr2 (340-491)||(4779608-4779759)
chr2 (341-519)||(4775629-4775808)
chr2 (340-404)||(21606149-21606213)
chr2 (341-493)||(25275620-25275771)
chr2 (360-509)||(14565870-14566019)
chr2 (341-483)||(41095784-41095926)
chr2 (455-514)||(37811091-37811150)
chr2 (340-376)||(919447-919483)
[»] chr5 (17 HSPs)
chr5 (342-516)||(19357261-19357434)
chr5 (341-516)||(11607532-11607707)
chr5 (341-509)||(33858536-33858704)
chr5 (340-514)||(1826259-1826433)
chr5 (380-516)||(39570080-39570216)
chr5 (418-516)||(9827786-9827884)
chr5 (341-498)||(33271630-33271787)
chr5 (418-514)||(38010689-38010785)
chr5 (418-514)||(13015381-13015477)
chr5 (418-514)||(29989962-29990058)
chr5 (64-206)||(35868428-35868569)
chr5 (447-514)||(13086753-13086820)
chr5 (418-514)||(13478120-13478216)
chr5 (72-161)||(29374536-29374625)
chr5 (365-459)||(42148201-42148295)
chr5 (418-513)||(13421085-13421180)
chr5 (341-377)||(9827903-9827939)
[»] chr4 (18 HSPs)
chr4 (341-514)||(12473704-12473877)
chr4 (341-514)||(12528113-12528286)
chr4 (347-516)||(35869575-35869744)
chr4 (341-516)||(22343335-22343510)
chr4 (366-513)||(33249397-33249544)
chr4 (343-513)||(52910050-52910219)
chr4 (341-516)||(51811912-51812087)
chr4 (358-516)||(21260792-21260950)
chr4 (341-516)||(55590480-55590644)
chr4 (418-514)||(52012778-52012874)
chr4 (428-522)||(34829168-34829262)
chr4 (418-514)||(9799438-9799534)
chr4 (72-172)||(34934150-34934250)
chr4 (455-510)||(49998486-49998541)
chr4 (341-410)||(1796654-1796723)
chr4 (418-513)||(49999663-49999758)
chr4 (340-402)||(35781021-35781083)
chr4 (473-516)||(33174516-33174560)
[»] chr1 (14 HSPs)
chr1 (341-514)||(2569037-2569209)
chr1 (343-514)||(29119324-29119495)
chr1 (345-516)||(32676134-32676305)
chr1 (340-514)||(46435462-46435624)
chr1 (365-516)||(8462127-8462277)
chr1 (418-514)||(8809715-8809811)
chr1 (421-516)||(25161307-25161402)
chr1 (442-516)||(7214510-7214584)
chr1 (341-400)||(15387156-15387215)
chr1 (125-225)||(8382284-8382384)
chr1 (465-513)||(16679821-16679868)
chr1 (455-514)||(35998252-35998311)
chr1 (342-377)||(36771533-36771568)
chr1 (111-172)||(7608541-7608602)
[»] chr6 (8 HSPs)
chr6 (340-513)||(1211841-1212014)
chr6 (341-514)||(5403874-5404047)
chr6 (341-516)||(32644836-32645009)
chr6 (449-519)||(11753162-11753232)
chr6 (418-514)||(34245567-34245663)
chr6 (340-385)||(10503256-10503301)
chr6 (421-513)||(11113557-11113649)
chr6 (359-410)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (341-516)||(35341534-35341709)
chr7 (341-514)||(48250154-48250329)
chr7 (341-516)||(48072387-48072560)
chr7 (341-490)||(32694568-32694717)
chr7 (421-510)||(31306951-31307041)
chr7 (359-410)||(40856949-40857000)
chr7 (455-513)||(36776062-36776120)
chr7 (418-514)||(40893116-40893213)
chr7 (450-514)||(40856392-40856456)
[»] chr8 (11 HSPs)
chr8 (340-514)||(24337827-24338001)
chr8 (76-235)||(25843013-25843172)
chr8 (69-233)||(29282562-29282727)
chr8 (341-516)||(11254026-11254200)
chr8 (347-522)||(41179567-41179742)
chr8 (341-507)||(18168392-18168559)
chr8 (341-507)||(18631949-18632116)
chr8 (364-506)||(4708328-4708470)
chr8 (418-514)||(1514803-1514899)
chr8 (76-200)||(42351691-42351815)
chr8 (462-513)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (341-513)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (341-516)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (341-516)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (465-513)||(23094-23142)
scaffold0263 (418-513)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (418-514)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 26529576 - 26529900
Alignment:
Q  16 catattccagtactaccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgcgatggcacaggttttcttgcgtccca 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  26529576 catattccagtactcccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgcggtggcacaggttttcttgcatccca 26529675  T
Q  116 aggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccaca 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26529676 aggcaaaaattgtcgtgatttggacaacctaacatatgtagcttcacaacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccaca 26529775  T
Q  216 tagccaaacaaacacttacaagatctcaacgatcatagtcaataaatatgtaaggacccaattttttgttatggatatttttccttcaattagcaaaacc 315  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26529776 tagccaaacaaacacttaaaagatctcaacgatcatagtcaataaatatgcaaggacccaattttttggtatggatatttttccttcaattagcaaaacc 26529875  T
Q  316 ctttactttactcatgcaagaatgg 340  Q
     ||||||| |||||| |||||||||    
T  26529876 atttacttcactcattcaagaatgg 26529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 340 - 519
Target Start/End: Complemental strand, 37742899 - 37742723
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||       ||||||||||||||||||||||    
T  37742899 gggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggta 37742800  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 519  Q
    |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||    
T  37742799 atgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaaccc 37742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 44380427 - 44380252
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     ||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaa 44380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 343 - 510
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  343 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 442  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| |||||| || |||||||| |||||       || ||||||||||||||   ||| |    
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  443 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 510  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 513
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||||||||| |||||  ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 514
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  368 tataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactcta 467  Q
    ||||||||||  |||||| |||||  || ||||||||||||||       |||||||||||||||||   ||| |||| |||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  468 attggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 32319473 - 32319543
Alignment:
Q  451 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaacccca 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatccca 32319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 10179868 - 10179936
Alignment:
Q  448 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaa 10179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 35094717 - 35094544
Alignment:
Q  345 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 444  Q
    |||| ||||||| ||||||||||| || |||||| |||||| ||||||||||||| |||| |||||       |||||||||||||  |||  ||| |||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  445 atattggtaggtggcacactc--taattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    | |||||||||||||| ||||  ||||| | ||||||||||||||| |||||| ||||||||||  ||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaa 35094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 10018671 - 10018739
Alignment:
Q  448 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaa 10018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  |||  ||| ||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 17466446 - 17466271
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaa 17466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 512
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  362 atggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcac 461  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||       ||||| |||||||  |||  |||  ||| || | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  462 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 512  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 10123211 - 10123279
Alignment:
Q  448 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaa 10123279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 19619271 - 19619217
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtca 395  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  461 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  459 cacactctaattggccaatggtatataccattggtacctta 499  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 342 - 516
Target Start/End: Original strand, 34392080 - 34392254
Alignment:
Q  342 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 441  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | |||| || ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  442 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaa 34392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 7381864 - 7381690
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||||||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaa 7381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 340 - 500
Target Start/End: Original strand, 23863800 - 23863958
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||||| |||||| || ||||||||||||||       ||||||||||||||||||  ||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 500  Q
    | |||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863900 aagtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 43779399 - 43779553
Alignment:
Q  71 atagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacg 170  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |  |||  ||||||||||||||  ||||||    
T  43779399 atagcttgtttggatgtgcgatggaacaagttttcttgcgtcccaaggcaaaaattgtcgtgatttggaaaggctactatatgtagcttcactgcaaacg 43779498  T
Q  171 tgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaaca 225  Q
    |||   |||||||||||||||  || |||| |||||| |||  || |||||||||    
T  43779499 tgagttcctgccgtgattttggtttgatgtggaaatggcactgcacagccaaaca 43779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 341 - 516
Target Start/End: Original strand, 37357915 - 37358094
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 436  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  437 gtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     ||| |||| |||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaa 37358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 418 - 516
Target Start/End: Complemental strand, 21604055 - 21603957
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    ||||||||||||| ||||  ||| |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 21603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 491
Target Start/End: Complemental strand, 4779759 - 4779608
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||       |||||||||||||| |||  ||    
T  4779759 gggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttata 4779660  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattg 491  Q
    | |||| |||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779659 aagtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 341 - 519
Target Start/End: Complemental strand, 4775808 - 4775629
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagca-ttggta 439  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | |||| || |||||||| |||||       ||||| ||||||| || ||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 519  Q
    | |||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| |||||| ||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtaccc 4775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca 404  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 493
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| |||||       |||||||||||||| |||   ||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt-taaa 25275718  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggt 493  Q
     |||| |||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275719 agtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 509
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  360 taatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 459  Q
    ||||| ||||||| |||| ||| ||| ||||||| || ||||||| |||||       |||||||||| ||| | |  |||  ||||||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  460 acactctaattggccaatggtatataccattggtaccttaatggtacaca 509  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   |||| || |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtata 483  Q
     |||| ||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  455 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 919447 - 919483
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccatt 376  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  919447 gggatagcacttgtgtaccataatggtttataccatt 919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 342 - 516
Target Start/End: Original strand, 19357261 - 19357434
Alignment:
Q  342 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 441  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  442 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaa 19357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 341 - 516
Target Start/End: Original strand, 11607532 - 11607707
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  |||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaa 11607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 341 - 509
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 509  Q
     |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 340 - 514
Target Start/End: Complemental strand, 1826433 - 1826259
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||||| |||||| || ||||||||  ||||       |||||||||||||||||    |    
T  1826433 gggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctaca 1826334  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1826333 aagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 516
Target Start/End: Original strand, 39570080 - 39570216
Alignment:
Q  380 caattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatgg 479  Q
    |||||| ||| ||||| ||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  480 tatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||||||||||| ||| |||||| |||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaa 39570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 418 - 516
Target Start/End: Complemental strand, 9827884 - 9827786
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||||||||||||  |||  ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaa 9827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 341 - 498
Target Start/End: Complemental strand, 33271787 - 33271630
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||| |||||| |||||||| || |||||       ||||||||||||||||||  | |    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatca 33271688  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtacctt 498  Q
     |||| |||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271687 agtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||||  |||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 35868569 - 35868428
Alignment:
Q  64 gtttcttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacg 163  Q
    |||||| |||||||||||||||||||| ||| |   | ||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||||      
T  35868569 gtttctaatagcttgtttggatgtgcggtggaagcagctttctcgcgtcccaaggcaaaaattgccgtgatttggaaaagctattatatgtagcttcagt 35868470  T
Q  164 acaaacgtgaccacctgccgtgattttgccttaatgtagaaat 206  Q
      |||||||    ||||||||||||||||||| |||| |||||    
T  35868469 gtaaacgtg-gttcctgccgtgattttgccttgatgtggaaat 35868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 13086820 - 13086753
Alignment:
Q  447 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086820 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||||  |||  ||| |||| | ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 29374536 - 29374625
Alignment:
Q  72 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttca 161  Q
    ||||||||||||||||||| ||| |   | ||||| || ||||||||||||||||||||||||||||| || |||  ||||||| |||||    
T  29374536 tagcttgtttggatgtgcggtggaagcagctttctcgcatcccaaggcaaaaattgccgtgatttggaaaagctactatatgtaacttca 29374625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 459
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  365 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 459  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||       ||||||||||||| ||||  ||| |||| |||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||| ||||||||||||  ||| |||| |||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattg 377  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 514
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 514
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 347 - 516
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  347 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 446  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||  ||  ||||     
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  447 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 22343510 - 22343335
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||| ||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaa 22343335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 366 - 513
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  366 tatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactc 465  Q
    |||||| ||||| ||||||| | |||| || ||||||||||||||       ||||||||||||||||||  ||| |||| ||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  466 taattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 343 - 513
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  343 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 442  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||| ||||||||| ||| |||       | ||||||||||||||||  ||| |    
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  443 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 51812087 - 51811912
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||||||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaa 51811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 358 - 516
Target Start/End: Complemental strand, 21260950 - 21260792
Alignment:
Q  358 cataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtg 457  Q
    |||||||||||||| ||||   |||||| |||||| || ||||||||||||||       ||||||||||||| ||||  ||| |||| |||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  458 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaa 21260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 55590644 - 55590480
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||| ||| ||||||||||||| ||||||  |||||| |||||||||||||||||| |||||       ||||||||||||||             
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag--------- 55590554  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
      ||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  55590553 --taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaa 55590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 522
Target Start/End: Original strand, 34829168 - 34829262
Alignment:
Q  428 aaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 522  Q
    ||||||||  ||| |||| ||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| || |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcccaa 34829262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||| ||||||| ||||  ||| |||| ||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 34934250 - 34934150
Alignment:
Q  72 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgt 171  Q
    ||||||||||||||||||| ||| | | ||||||| ||||||||| ||||||||||| || ||||||| || |||  |||||||| |||||  |||||||    
T  34934250 tagcttgtttggatgtgcggtggaataagttttctcgcgtcccaaagcaaaaattgcagttatttggaaaagctactatatgtagtttcactgcaaacgt 34934151  T
Q  172 g 172  Q
    |    
T  34934150 g 34934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 510
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  455 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 510  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 410  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||||||||||||||||  |||  ||| ||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 35781083 - 35781021
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggca 402  Q
    |||||| |||||| ||| ||||||||||||||||||||  |||||| |||||| |||||||||    
T  35781083 gggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 516
Target Start/End: Complemental strand, 33174560 - 33174516
Alignment:
Q  473 ccaatggtatataccattggta-ccttaatggtacacaagtggaa 516  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaa 33174516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 341 - 514
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||| ||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 343 - 514
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  343 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 442  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| |||||| || ||||||||||||||       |||||||||||||||||   ||| |    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  443 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 32676305 - 32676134
Alignment:
Q  345 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 444  Q
    |||| |||||||  |||||||||||||||||||| |||||| | |||| || ||||||||  ||||       ||||||||||||||||||  ||| |||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  445 atattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    | ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 32676134  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 340 - 514
Target Start/End: Original strand, 46435462 - 46435624
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    ||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||| ||| ||||||||||       |||||||||||||||||   ||    
T  46435462 gggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctata 46435561  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46435562 a------------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 365 - 516
Target Start/End: Complemental strand, 8462277 - 8462127
Alignment:
Q  365 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacact 464  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||       ||||| ||||||| ||||  |||  ||| ||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  465 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     ||||||  ||||| |||||||||||||||| |||||  |||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaa 8462127  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 516
Target Start/End: Complemental strand, 25161402 - 25161307
Alignment:
Q  421 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    |||||||||| ||||  ||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaa 25161307  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 516
Target Start/End: Original strand, 7214510 - 7214584
Alignment:
Q  442 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
    ||||||| | |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| |||||    
T  7214510 gtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaa 7214584  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 15387156 - 15387215
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtgg 400  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  15387156 ggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 8382284 - 8382384
Alignment:
Q  125 ttgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaac 224  Q
    ||||||||||| ||| || |||  ||| ||||||||||  |||||||||   ||||||||||||||| ||| |||| |||||| |||| || ||||||||    
T  8382284 ttgccgtgattcggaaaagctactatacgtagcttcactgcaaacgtgagttcctgccgtgattttggcttgatgtggaaatggcaccgcacagccaaac 8382383  T
Q  225 a 225  Q
    |    
T  8382384 a 8382384  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 513
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  465 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 35998311 - 35998252
Alignment:
Q  455 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998311 gtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 377
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  342 gatagcacttgtgtaacataatggtatataccattg 377  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 7608541 - 7608602
Alignment:
Q  111 tcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtg 172  Q
    |||||||||||||||||  |||||||||| || |||  ||||||||||||||  ||||||||    
T  7608541 tcccaaggcaaaaattgatgtgatttggaaaagctactatatgtagcttcacagcaaacgtg 7608602  T

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Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 340 - 513
Target Start/End: Original strand, 1211841 - 1212014
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||| |||||| |||||||||||||||||       ||||||||||||||||| | ||    
T  1211841 gggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgata 1211940  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1211941 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 341 - 514
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
     |||| |||||||||||||| ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 341 - 516
Target Start/End: Original strand, 32644836 - 32645009
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| ||||||||| |||  |||    
T  32644836 ggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-ttaa 32644933  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| ||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| ||||||    
T  32644934 agtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaa 32645009  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 11753232 - 11753162
Alignment:
Q  449 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 519  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggtaccc 11753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 10503256 - 10503301
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaatta 385  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503256 gggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 513
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  421 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||||||||||| |   || |||| ||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  359 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 410  Q
    |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 35341709 - 35341534
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaa 35341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 341 - 514
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 438  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  439 aatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    || |||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 48072560 - 48072387
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       || ||||||||||  |||  |||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataa 48072461  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
      ||| ||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||    
T  48072460 aataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaa 48072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 341 - 490
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccatt 490  Q
     |||| |||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  421 atcaaataaagcattggtaatgtaatattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 510  Q
    |||||||||||||||  ||| |||| |||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  359 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 410  Q
    ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  455 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 40893116 - 40893213
Alignment:
Q  418 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 40893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  450 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 340 - 514
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  340 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 439  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | ||||||||||||||       |||||||||||||||||   ||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    | |||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 25843172 - 25843013
Alignment:
Q  76 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 175  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||    
T  25843172 ttgtttggatgagcggtgccacaggttttcttgcatcccaaggcaaaaattgccgtgatttggaaacgctaccatgtgtagcttcactacaaacgtgacc 25843073  T
Q  176 acctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaca 235  Q
    |||||| |||||||||  || |||| ||||| |||||||| |||||||||| ||||||||    
T  25843072 acctgctgtgattttggtttgatgtggaaattacaccacacagccaaacaagcacttaca 25843013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 29282727 - 29282562
Alignment:
Q  69 ttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaa---ttgccgtgatttggacaacctaacatatgtagcttcacgac 165  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||   ||  ||||||||||| || | | ||||||||||||||| ||    
T  29282727 ttatagcttgtttggatgtgcgatggtacaggttttctcgcgtcccaaggcaaaaaaaatt--cgtgatttggaaaagcaaccatatgtagcttcactac 29282630  T
Q  166 aaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacactta 233  Q
    ||| | |||||||||| |||||||||  || |||| |||||||||||||| |||||||||| ||||||    
T  29282629 aaatgcgaccacctgcagtgattttggtttgatgtggaaatgacaccacacagccaaacaagcactta 29282562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 341 - 516
Target Start/End: Original strand, 11254026 - 11254200
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 347 - 522
Target Start/End: Original strand, 41179567 - 41179742
Alignment:
Q  347 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 446  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||| || |||||||| || ||       ||||| ||||||| ||||  ||| ||||     
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  447 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 522  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcccaa 41179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 507
Target Start/End: Complemental strand, 18168559 - 18168392
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 439  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18168559 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18168460  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 507  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168459 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 507
Target Start/End: Complemental strand, 18632116 - 18631949
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 439  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18632116 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18632017  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 507  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632016 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 506
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  364 ggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacac 463  Q
    |||| |||||||||   ||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  464 tctaattggccaatggtatataccattggtaccttaatggtac 506  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 42351691 - 42351815
Alignment:
Q  76 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 175  Q
    |||||||||||||   ||| ||| ||||||| |||||| || |||||||||||||||||||| | || | |  ||||||||||||||  |||||||||      
T  42351691 ttgtttggatgtgtcgtggaacaagttttctcgcgtcctaaagcaaaaattgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaat 42351790  T
Q  176 acctgccgtgattttgccttaatgt 200  Q
     ||||||||||||||| ||| ||||    
T  42351791 tcctgccgtgattttggcttgatgt 42351815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 32825954 - 32826005
Alignment:
Q  462 actctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 341 - 513
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 439  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||| ||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  440 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 34365 - 34192
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||| ||||||| ||||| |||||||| |||| | |||||| ||||||||||||| ||||||||||       |||||||||||||  |||  |||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataa 34268  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaa 34192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 11367 - 11193
Alignment:
Q  341 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 440  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  441 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 516  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 513
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  465 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  418 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 513  Q
    |||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 73168 - 73071
Alignment:
Q  418 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 514  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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