View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11494_low_6 (Length: 455)
Name: NF11494_low_6
Description: NF11494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11494_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 38865097 - 38864668
Alignment:
| Q |
11 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38865097 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
38864998 |
T |
|
| Q |
111 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38864997 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacacccatcat |
38864898 |
T |
|
| Q |
211 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcacaacaaccaattgttgtgccagtactagaaaccgttataaggatcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38864897 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcacaacaaccaattgttatgccagtactagaaaccgttataaggatcca |
38864798 |
T |
|
| Q |
311 |
accacttgagcatgaagctttggaacgtaactatagagaaatataaactaattaaataccctctcttaatgtcttgagttgtgtttgagcaagaaagttc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38864797 |
accacttgagcatgaagctttggaacgtaactatagagaaatataaactaattaaataccctctcttaatgtcttgagttgtggttgagcaagaaagttc |
38864698 |
T |
|
| Q |
411 |
atatcaaatttgatcaaccatagtcaaaac |
440 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
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|
| T |
38864697 |
atatcaaatttgatcaaccatagtgaaaac |
38864668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 38841029 - 38840682
Alignment:
| Q |
12 |
aaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctct |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||||||||||| ||| |||| |||||||| ||||||||||| |||| ||||| |||||||||| |
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| T |
38841029 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctct |
38840930 |
T |
|
| Q |
112 |
cagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcatg |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
38840929 |
cagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatg |
38840830 |
T |
|
| Q |
212 |
tccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcaca---acaaccaattgttgtgccagtactagaaaccgttataaggatc |
308 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| | |||| || ||||||||||| ||||||| | ||||| ||||||||||| |
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|
| T |
38840829 |
tccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattggtgggtcgcaggtgcaaccaattgtgttgccagtgccagaaattattataaggatc |
38840730 |
T |
|
| Q |
309 |
caaccacttgagcatgaagctttggaacgtaactatagagaaatataa |
356 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
38840729 |
gaaccactagagcacgaagctttggaacgtaactatagggaaatataa |
38840682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 38861642 - 38861297
Alignment:
| Q |
11 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
110 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| || ||| |||||||||| | |||||||| || ||||||||||||||||| ||||| ||||||||| |
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|
| T |
38861642 |
caaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaagtttggatacagattgtatgatatgtctc |
38861543 |
T |
|
| Q |
111 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcat |
210 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
38861542 |
tcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcat |
38861443 |
T |
|
| Q |
211 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcacaa---caaccaattgttgtgccagtactagaaaccgttataaggat |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||| | ||||||| | |||||| |||||||||| |
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| T |
38861442 |
gtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattggtgggtcgcaagtgcaaccaattttgttgccagtgccagaaactattataaggat |
38861343 |
T |
|
| Q |
308 |
ccaaccacttgagcatgaagctttggaacgtaactatagagaaata |
353 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
38861342 |
agaaccactagagcacgaagctttggaacgtaactatagagaaata |
38861297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 38850874 - 38851222
Alignment:
| Q |
11 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
110 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| || ||| |||||||||| | |||||||| || ||||||||||||||||| ||||| ||||||||| |
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|
| T |
38850874 |
caaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaagtttggatacagattgtatgatatgtctc |
38850973 |
T |
|
| Q |
111 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcat |
210 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
38850974 |
tcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcat |
38851073 |
T |
|
| Q |
211 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcacaa---caaccaattgttgtgccagtactagaaaccgttataaggat |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||||| ||||||| | |||||| |||||| || |
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|
| T |
38851074 |
gtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattggtgggtcgcaagtgcaaccaattgtgttgccagtgccagaaactattataactat |
38851173 |
T |
|
| Q |
308 |
ccaaccacttgagcatgaagctttggaacgtaactatagagaaatataa |
356 |
Q |
| |
|
||||||||| || | | |||||||||| ||||||||||| ||||||||| |
|
|
| T |
38851174 |
ccaaccactagaacctcaagctttggagcgtaactatagggaaatataa |
38851222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 38858767 - 38858524
Alignment:
| Q |
12 |
aaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctct |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||||||||||| ||| |||| |||||||| ||||||||||| |||| ||||| |||||||||| |
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|
| T |
38858767 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctct |
38858668 |
T |
|
| Q |
112 |
cagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcatg |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
38858667 |
cagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatg |
38858568 |
T |
|
| Q |
212 |
tccaaagtgtagacaatgtcttcttgaaacttgtagaaagattg |
255 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
38858567 |
tccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattg |
38858524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 38846850 - 38846604
Alignment:
| Q |
11 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||||||| |||| |||||||||||||||| | ||||||||| |
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|
| T |
38846850 |
caaaggaatcaagaagaaagctctcaagacattcccaacagtaagttattcaactgagttgaaactaccaactttggatacagagtgtgtgatatgtctc |
38846751 |
T |
|
| Q |
111 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcat |
210 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
38846750 |
tcagaattcacaaaaggtgaaaaggtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaatcacactcatcat |
38846651 |
T |
|
| Q |
211 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgtt |
257 |
Q |
| |
|
| || ||||| ||||| || || ||||| |||||| ||||||||||| |
|
|
| T |
38846650 |
gccctaagtgcagacagtgcctccttgagacttgtcgaaagattgtt |
38846604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 38827242 - 38826996
Alignment:
| Q |
11 |
caaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctc |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||| || |||||| ||||||| ||||| |||| |||||||||||||||| | ||||||||| |
|
|
| T |
38827242 |
caaaggaatcaagaagaaagctctcaagacatttccaacagtaagttattcaactgagttaaaactaccaactttggatacagagtgtgtgatatgtctc |
38827143 |
T |
|
| Q |
111 |
tcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcat |
210 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
38827142 |
tcagaattcacaaaaggtgaaaaggtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaatcacactcatcat |
38827043 |
T |
|
| Q |
211 |
gtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgtt |
257 |
Q |
| |
|
| || ||||| ||||| || || ||||| |||||| ||||||||||| |
|
|
| T |
38827042 |
gccctaagtgcagacagtgcctccttgagacttgtcgaaagattgtt |
38826996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 43666239 - 43665988
Alignment:
| Q |
15 |
ggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctctcag |
114 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| || || |||| |||| ||||| | || |||||||| | |||||| | |||||||| || | |
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|
| T |
43666239 |
ggaatcaagaagaaagctctcaagaaattcaccacagttagttactcagatgagctgaaattgccgagtttggactcggagtgtgtgatatgtctgtcgg |
43666140 |
T |
|
| Q |
115 |
agtttacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaaaggaacactcatcatgtcc |
214 |
Q |
| |
|
|||| || || || || || |||||| ||||||| || || |||||||||||||| ||||||||||||||||||||||||| || || || ||||| |
|
|
| T |
43666139 |
agttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaagttcgcattcgtcttgtcc |
43666040 |
T |
|
| Q |
215 |
aaagtgtagacaatgtcttcttgaaacttgtagaaagattgttcggtcacaa |
266 |
Q |
| |
|
|| |||||||| || ||| |||||||||||| || |||||| |||||||| |
|
|
| T |
43666039 |
gaaatgtagacagtgccttattgaaacttgtaacaaaattgttgggtcacaa |
43665988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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